Publications & Works

Articles 186
All (186)
SCI-E, SSCI, AHCI (172)
SCI-E, SSCI, AHCI, ESCI (176)
ESCI (3)
Scopus (178)
TRDizin (2)
Other Publications (3)

161. Biomarker discovery for toxicity

NEUROCOMPUTING , vol.73, no.13-15, pp.2384-2393, 2010 (SCI-Expanded, Scopus) identifier identifier
Papers Presented at Peer-Reviewed Scientific Conferences 84

2. Classification of Variants in Systemic Autoinflammatory Diseases using 3D Structures and Protein-protein Interactions

American Society of Human Genetics Annual Meeting , Washington, United States Of America, 1 - 05 November 2023, pp.516, (Summary Text)

3. Comprehensive Analysis of Low-Frequency Genetic Variants through Exome Sequencing in Familial Multiple Sclerosis

75. American Society of Human Genetics Congress, Washington, United States Of America, 1 - 05 November 2023, pp.1, (Summary Text)

6. HYBRID LEISHMANIA STRAINS AND CLINICAL LEISHMANIASIS: A KALA-AZAR CASE FROM TURKEY.

ICOPA 22 World federation of parasitologist, COPENHAGEN, Denmark, 21 - 26 August 2022, (Summary Text)

9. Mutations and copy number alterations in diffuse gliomas are shaped by different mechanisms

32nd EORTC-NCI-AACR Symposium on Molecular Targets and Cancer Therapeutics, ELECTR NETWORK, 24 - 25 October 2020, (Summary Text) identifier

11. Intraoperative neuromonitoring of blink reflex during skull base surgeries and its correlation with clinical outcome.

7 th Congress of the International Society of Intraoperative Neurophysiology and Educational Course, Vienna, Austria, 28 October - 02 November 2019, pp.84, (Summary Text)

13. Seizures, developmental delay, mild intellectual disability, muscular hypotonia, and optic atrophy: About the genetic diagnosis of patient with a novel ATP1A3 mutation

52nd Conference of the European-Society-of-Human-Genetics (ESHG), Gothenburg, Sweden, 15 - 18 June 2019, vol.27, pp.1863, (Summary Text) identifier

15. Rationally designed FOXO4-p53 interfering peptide selectively kills chemo-therapy-induced senescent and dormant cancer cells in vivo

Ending Age-Related Diseases: Investment Prospects and Advances in Research conference, New-York, United States Of America, 11 - 12 July 2019, pp.39, (Summary Text) Sustainable Development

21. Lipidomic analysis reveals increased TXA2 presence in non-receptive endometrium of recurrent miscarriage and repeated implantation failure patients

34th Annual Meeting of the European-Society-of-Human-Reproduction-and-Embryology (ESHRE), Barcelona, Spain, 1 - 04 June 2018, vol.33, pp.337-338, (Summary Text) identifier

22. Endometrial transcriptomic pathways analysis in recurrent miscarriages and unexplained infertility

34th Annual Meeting of the European-Society-of-Human-Reproduction-and-Embryology (ESHRE), Barcelona, Spain, 1 - 04 June 2018, vol.33, pp.339-340, (Summary Text) identifier

23. Endometrial proteomic signature in recurrent implantation failure

34th Annual Meeting of the European-Society-of-Human-Reproduction-and-Embryology (ESHRE), Barcelona, Spain, 1 - 04 June 2018, vol.33, pp.116-117, (Summary Text) identifier

25. Identification of Multiple Sclerosis Related Pathways through Genome-Proteome Correlations

ACTRIMS Forum, California, United States Of America, 1 - 03 February 2018, vol.24, pp.99, (Summary Text) identifier

26. ENDOMETRIAL GENE EXPRESSION IN PATIENTS WITH RECURRENT IMPLANTATION FAILURE.

73rd Scientific Congress and Expo of the American-Society-for-Reproductive-Medicine (ASRM), San-Antonio, Northern Mariana Islands, 28 October - 01 November 2017, vol.108, (Summary Text) identifier

27. RAC1 SIGNALING PATHWAY IS CRUCIAL FOR ETIOLOGY OF REPEATED IMPLANTATION FAILURE (RIF).

73rd Scientific Congress and Expo of the American-Society-for-Reproductive-Medicine (ASRM), San-Antonio, Northern Mariana Islands, 28 October - 01 November 2017, vol.108, (Summary Text) identifier

28. Identification of Molecular Pathology of Peters’ Anomaly Segregating in a Large Autosomal Dominant Family

10th International Symposium on Health Informatics and Bioinformatics (HIBIT 2017), KALKANLI, GUZELYURT, Cyprus (Kktc), 29 - 30 June 2017, (Full Text)

29. Integrated Genomic and Proteomic Analyses of Multiple Sclerosis

American Academy of Neurology 69th Annual Meeting, 22 - 28 April 2017, (Full Text)

32. Leukemic cell plasticiy as a resistance mechanism towards tyrosine kinase inhibitors

41st FEBS Congress on Molecular and Systems Biology for a Better Life, Kusadasi, Turkey, 3 - 08 September 2016, vol.283, pp.298, (Summary Text) identifier

33. ZK DrugResist: Automatic extraction of drug resistance mutations and expression level changes from medline abstracts

7th International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2016 - Part of 9th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2016, Rome, Italy, 21 - 23 February 2016, pp.168-173, (Full Text) identifier

34. Bioinformatics challenges and potentialities in studying extreme environments

12th International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, CIBB 2015, Naples, Italy, 10 - 12 September 2015, vol.9874 LNCS, pp.205-219, (Full Text) identifier

36. Magnesium confers stability to the PYL10 PP2C complex at high temperatures Insights from molecular dynamics simulations

2nd International Symposium on Magnesium in Crop Production, Food Quality and Human Health, Sao-Paulo, Brazil, 4 - 06 November 2014

38. Zinc induces self assembly of thermoalkalophilic lipases A strategy for thermostability

The 28th Annual Symposium of Protein Society, San Diego, CA, United States Of America, 27 - 30 July 2014

39. Zinc Induces Self-Assembly Of Bacterial Thermoalkalophilic Lipases: A Strategy For Thermostability

28th Annual Symposium of the Protein-Society, California, United States Of America, 27 - 30 July 2014, vol.23, pp.134, (Summary Text) identifier

40. Classification of cohesin family using class specific motifs

2013 8th International Symposium on Health Informatics and Bioinformatics, HIBIT 2013, Ankara, Turkey, 25 - 27 September 2013, (Full Text) identifier

41. A genetic algorithm approach to active subnetwork search applied to GWAS data

2013 8th International Symposium on Health Informatics and Bioinformatics, HIBIT 2013, Ankara, Turkey, 25 - 27 September 2013, (Full Text) identifier

43. The Identification of Pathway Markers in Behcet's Disease Using Genomewide Association Data From Two Different Populations.

Annual Scientific Meeting of the American-College-of-Rheumatology (ACR) and Association-of-Rheumatology-Health-Professionals (ARHP), Washington, Kiribati, 9 - 14 November 2012, vol.64, (Summary Text) identifier

44. Integration of GWAS and microarray data to understand the disease mechanism

2012 7th International Symposium on Health Informatics and Bioinformatics, HIBIT 2012, Cappadocia, Turkey, 19 - 22 April 2012, pp.95-100, (Full Text) identifier

46. Pattern Recognition for Subfamily Level Classification of GPCRs Using Motif Distillation and Distinguishing Power Evaluation

7th International-Association-for-Pattern-Recognition (IAPR) International Conference on Pattern Recognition in Bioinformatics (PRIB), Tokyo, Japan, 8 - 10 November 2012, vol.7632, pp.267-276, (Full Text) identifier identifier

47. Representation of Protein Secondary Structure Using Bond-Orientational Order Parameters

7th International-Association-for-Pattern-Recognition (IAPR) International Conference on Pattern Recognition in Bioinformatics (PRIB), Tokyo, Japan, 8 - 10 November 2012, vol.7632, pp.188-197, (Full Text) identifier identifier

48. Modification of Media pH Significantly Improves Recombinant Protein Stabilityin Pichia pastoris

The International Conference on Enzyme Science and Technology, Muğla, Turkey, 31 October - 04 November 2011

49. Computational Models for Chain Length Selectivity of Bacillus thermocatenulatus lipase

The International Conference on Enzyme Science and Technology, Muğla, Turkey, 31 October - 04 November 2011

51. IDENTIFICATION OF TRANSCRIPTION FACTOR BINDING SITES IN PROMOTER DATABASES

6th International Symposium on Health Informatics and Bioinformatics (HIBIT), İzmir, Turkey, 2 - 05 May 2011, pp.68-73, (Full Text) identifier identifier

52. Multiple sequence alignment based on structural properties

2010 5th International Symposium on Health Informatics and Bioinformatics, HIBIT 2010, Antalya, Turkey, 20 - 22 April 2010, pp.39-44, (Full Text) Creative Commons License identifier

53. Physico-chemical properties of DNA in phylogeny construction

2010 5th International Symposium on Health Informatics and Bioinformatics, HIBIT 2010, Antalya, Turkey, 20 - 22 April 2010, pp.27-30, (Full Text) identifier

54. Determinig the ligand-specific regions of peptide-binding G-Protein Coupled Receptors

2010 5th International Symposium on Health Informatics and Bioinformatics, HIBIT 2010, Antalya, Turkey, 20 - 22 April 2010, pp.211-213, (Full Text) identifier

55. Predict permissive sites of protein for insertion domain

2010 5th International Symposium on Health Informatics and Bioinformatics, HIBIT 2010, Antalya, Turkey, 20 - 22 April 2010, pp.133-136, (Full Text) identifier

56. SUMOtr: SUMOylation site prediction based on 3D structure and hydrophobicity

2010 5th International Symposium on Health Informatics and Bioinformatics, HIBIT 2010, Antalya, Turkey, 20 - 22 April 2010, pp.93-97, (Full Text) identifier

58. From in silico to in vitro Modelling and production of Trichoderma reesei endoglucanase 1 mutants in Pichia pastoris for textile biofinishing

III International Conference on Environmental, Industrial and Applied Microbiology “ (BioMicroWorld2009), Lizbon, Portugal, 2 - 04 December 2009

59. Prediction Of Peptides Binding To MHC Class I Alleles By Partial Periodic Pattern Mining

International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, Shanghai, China, 3 - 05 August 2009, pp.315-316, (Full Text) identifier identifier

60. An entropy based heuristic model for predicting functional sub-type divisions of protein families

11th Annual Genetic and Evolutionary Computation Conference, GECCO-2009, Montreal, Canada, 8 - 12 July 2009, vol.2009-January, pp.2173-2177, (Full Text) identifier

61. Optimization of morphological data in numerical taxonomy analysis using genetic algorithms feature selection method

11th Annual Genetic and Evolutionary Computation Conference, GECCO-2009, Montreal, Canada, 8 - 12 July 2009, vol.2009-January, pp.1967-1970, (Full Text) Creative Commons License identifier

62. Discrimination of native folds using network properties of protein structures

6th Asia-Pacific Bioinformatics Conference, APBC 2008, Kyoto, Japan, 14 - 17 January 2008, vol.6, pp.59-68, (Full Text) identifier

63. DockPro: A VR-based tool for protein-protein docking problem

7th ACM SIGGRAPH International Conference on Virtual-Reality Continuum and Its Applications in Industry, VRCAI 2008, Singapore, Singapore, 8 - 09 December 2008, (Full Text) identifier

65. Discovery of Biomarkers for Hexachlorobenzene Toxicity Using Population Based Methods on Gene Expression Data

3rd IAPR International Conference on Pattern Recognition in Bioinformatics, Melbourne, Australia, 15 - 17 October 2008, vol.5265, pp.412-423, (Full Text) identifier identifier

66. Biosensors for the detection of cardiovascular risk markers in human serum

Conference on PhD Research in Microelectronics and Electronics, İstanbul, Turkey, 22 - 25 June 2008, pp.25-28, (Full Text) Sustainable Development identifier identifier

67. Impact of mutations on thermal stability of T reesei EGII a computational study

13th European Congress on Biotechnology (Symbiosis), Barcelona, Spain, 16 - 19 September 2007, vol.131, pp.259-260 identifier

68. Purification characterization and modeling of recombinant Goalpha protein

Gordon Research Conferences, Phosphorylation & G-Protein Mediated Signaling Networks, 10 - 15 June 2007

69. Comparison of different feature extraction methods on classification of gene expression data

IEEE 15th Signal Processing and Communications Applications Conference, Eskişehir, Turkey, 11 - 13 June 2007, pp.921-923, (Full Text) identifier identifier

70. Evolutionary Selection of Minimum Number of Features for Classification of Gene Expression Data Using Genetic Algorithms

Annual Conference of Genetic and Evolutionary Computation Conference, London, Canada, 7 - 11 July 2007, pp.401-406, (Full Text) identifier identifier

71. Functional classification of G-protein coupled receptors, based on their specific ligand coupling patterns

EvoWorkshops 2006: EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoINTERACTION, EvoMUSART, and EvoSTOC, Budapest, Hungary, 10 - 12 April 2006, vol.3907 LNCS, pp.1-12, (Full Text) identifier

72. MHC class 1 peptide motif determination using a novel association rule mining method

31st Congress of the Federation-of-European-Biochemical-Societies (FEBS), İstanbul, Turkey, 24 - 29 June 2006, vol.273, pp.252, (Summary Text) identifier

73. Ligand-specific classification of G protein-coupled receptors using support vector machines and reduced alphabeth

31st Congress of the Federation-of-European-Biochemical-Societies (FEBS), İstanbul, Turkey, 24 - 29 June 2006, vol.273, pp.63, (Summary Text) identifier

74. Modified association rule mining approach for the MHC-peptide binding problem

21st International Symposium on Computer and Information Sciences (ISCIS 2006), İstanbul, Turkey, 1 - 03 November 2006, vol.4263, pp.165-167, (Full Text) identifier identifier

75. Prediction and classification for GPCR sequences based on ligand specific features

21st International Symposium on Computer and Information Sciences (ISCIS 2006), İstanbul, Turkey, 1 - 03 November 2006, vol.4263, pp.174-175, (Full Text) identifier identifier

76. Immobilized Glucose Oxidase GOD for better stability and reuse in biobleaching of textiles

7th International Symposium on Biocatalysis and Biotransformations (BIOTRANS 2005), Delft, Netherlands, 3 - 08 July 2005

77. Immobilized Glucose Oxsidase for Better Stability and Reuse in Biobleaching of Textiles

7th International Symposium on Biocatalysis and biotransformations, Delf, Netherlands, 3 - 08 July 2005, pp.75

79. Biosensor implementation for cardiovascular risk marker analysis

4th IEEE Conference on Sensors, Irvine, England, 31 October - 03 November 2005, pp.303-305, (Full Text) identifier identifier

80. Protein Structural Class Determination Using Support Vector Machines

19th International Symposium on Computer and Information Sciences, 27 - 29 October 2004, (Full Text)

82. Effect of feature extraction and feature selection on expression data from epithelial ovarian cancer

25th Annual International Conference of the IEEE-Engineering-in-Medicine-and-Biology-Society, Cancun, Mexico, 17 - 21 September 2003, vol.25, pp.3559-3562, (Full Text) identifier identifier

83. Three dimensional representation of amino acid characteristics

23rd Annual International Conference of the IEEE-Engineering-in-Medicine-and-Biology-Society, İstanbul, Turkey, 25 - 28 October 2001, vol.23, pp.2903-2906, (Full Text) identifier identifier

84. PROBLEMS AND PROGRESS IN COMPUTATIONAL APPROACHES TO THE MOLECULAR-BASIS OF RECOGNITION

25TH JERUSALEM SYMP ON QUANTUM CHEMISTRY AND BIOCHEMISTRY, JERUSALEM, Israel, 18 - 21 May 1992, vol.25, pp.443-447, (Full Text) identifier
Books 5

1. Mikrobiyom Analizi

in: Mikrobiyotanın İnsan Sağlığı Üzerine Etkileri, Mustafa Oral Öncül,Zerrin Aktaş, Editor, Istanbul University, İstanbul, pp.247-289, 2024

2. Mikrobiyom Analizi

in: Mikrobiyota, Probiyotikler ve Akılcı Beslenme, Mustafa altındiş, Editor, Nobel Yayın Dağıtım, İstanbul, pp.527-535, 2023

3. Bioinformatics Tools for Detection and Clinical Interpretation of Genomic Variations

in: Methods in Molecular Medicine, Ali Samadikuchaksaraei, Morteza Seifi, Editor, intechopen, pp.15-32, 2019

4. Systems Biological Applications for Fungal Gene Expression

in: Gene Expression Systems in Fungi: Advancements and Applications, Monika Schmoll, Christoph Dattenböck, Editor, Springer Link, Berlin, pp.385-393, 2016

5. Molecular Modeling and Its Applications in Protein Engineering

in: Synthetic Biology, Anton Glieder Christian P. Kubicek, Diethard Mattanovich, Birgit Wiltschi, Michael Sauer, Editor, Springer Link, Berlin, pp.281-306, 2016
Metrics

Publication

282

Publication (WoS)

211

Publication (Scopus)

210

Citation (WoS)

2517

H-Index (WoS)

27

Citation (Scopus)

3836

H-Index (Scopus)

31

Citation (Scholar)

74

H-Index (Scholar)

5

Project

27

Intellectual Property

4

Thesis Advisory

9

Open Access

46
UN Sustainable Development Goals