Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure

Bakis Y., Otu H. H., Tasci N., Meydan C., Bilgin N., YÜZBAŞIOĞLU İ. S., ...Daha Fazla

BMC BIOINFORMATICS, cilt.14, 2013 (SCI-Expanded) identifier identifier identifier identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 14
  • Basım Tarihi: 2013
  • Doi Numarası: 10.1186/1471-2105-14-20
  • Dergi Adı: BMC BIOINFORMATICS
  • Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus
  • Anahtar Kelimeler: Resampling, Alignment free, Phylogenetics, Relative Complexity Measure, Galanthus, MULTIPLE SEQUENCE ALIGNMENT, CONFIDENCE, DNA, BOOTSTRAP, INFERENCE, ACCURACY
  • Acıbadem Mehmet Ali Aydınlar Üniversitesi Adresli: Hayır

Özet

Background: Most phylogeny analysis methods based on molecular sequences use multiple alignment where the quality of the alignment, which is dependent on the alignment parameters, determines the accuracy of the resulting trees. Different parameter combinations chosen for the multiple alignment may result in different phylogenies. A new non-alignment based approach, Relative Complexity Measure (RCM), has been introduced to tackle this problem and proven to work in fungi and mitochondrial DNA.