Prof.Dr. Osman Uğur SEZERMAN

SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

The importance of dysregulated miRNAs on ovarian cysts and epithelial ovarian cancer

Gumusoglu E., Gunel T., Hosseini M. K. , Seymen N., Senol T., SEZERMAN O. U. , et al.

EUROPEAN JOURNAL OF GYNAECOLOGICAL ONCOLOGY, cilt.42, sa.1, ss.66-72, 2021 (SCI İndekslerine Giren Dergi)

Lipase and Water in a Deep Eutectic Solvent: Molecular Dynamics and Experimental Studies of the Effects of Water-In-Deep Eutectic Solvents on Lipase Stability.

Shehata M., Unlu A., Sezerman U. , Timucin E.

The journal of physical chemistry. B, cilt.124, ss.8801-8810, 2020 (SCI İndekslerine Giren Dergi)

Intraoperative Neuromonitoring of Blink Reflex During Posterior Fossa Surgeries and its Correlation With Clinical Outcome.

Aydinlar E. , Kocak M., Soykam H. , Mat B., Dikmen P. , Sezerman O., et al.

Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society, sa.0, 2020 (SCI Expanded İndekslerine Giren Dergi)

Progesterone at high doses reduces the growth of U87 and A172 glioblastoma cells: Proteomic changes regarding metabolism and immunity

Altinoz M., Ucal Y. , Yilmaz M., Kiris İ., Ozisik O., Sezerman U. , et al.

CANCER MEDICINE, cilt.9, sa.16, ss.5767-5780, 2020 (SCI İndekslerine Giren Dergi)

Analysis of Correlation between the Seven Important Helicobacter pylori (H. pylori) Virulence Factors and Drug Resistance in Patients with Gastritis

ÖKTEM OKULLU S. , Cekic-Kipritci Z., Kilic E. , Seymen N., Mansur-Ozen N. , SEZERMAN O. U. , et al.

GASTROENTEROLOGY RESEARCH AND PRACTICE, cilt.2020, 2020 (SCI İndekslerine Giren Dergi)

Probing the Structural Dynamics of the Catalytic Domain of Human Soluble Guanylate Cyclase.

Khalid R., Maryam A., Sezerman O. U. , Mylonas E., Siddiqi A., Kokkinidis M.

Scientific reports, cilt.10, ss.9488, 2020 (SCI İndekslerine Giren Dergi)

High-throughput profiling reveals perturbation of endoplasmic reticulum stress-related genes in atherosclerosis induced by high-cholesterol diet and the protective role of vitamin E.

Bozaykut P. , Ekren R., Sezerman O. U. , Gladyshev V., Ozer N.

BioFactors (Oxford, England), 2020 (SCI Expanded İndekslerine Giren Dergi)

Understanding thermal and organic solvent stability of thermoalkalophilic lipases: insights from computational predictions and experiments.

Shehata M., Timucin E. , Venturini A., Sezerman O. U.

Journal of molecular modeling, cilt.26, ss.122, 2020 (SCI Expanded İndekslerine Giren Dergi)

HriGFP Novel Flourescent Protein: Expression and Applications

Saeed S., Mehreen H., Gerlevik U., Tariq A., Manzoor S., Noreen Z., et al.

MOLECULAR BIOTECHNOLOGY, cilt.62, sa.5, ss.280-288, 2020 (SCI İndekslerine Giren Dergi)

A comprehensive study on identifying the structural and functional SNPs of human neuronal membrane glycoprotein M6A (GPM6A)

Khalid Z., SEZERMAN O. U.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2020 (SCI İndekslerine Giren Dergi)

Understanding the impacts of self-shuffling approach on structure and function of shuffled endoglucanase enzyme via MD simulations Kendi üzerine gerçekleştirilen DNA karma yöntemi ile elde edilen endoglukanaz enzimlerinin yapı ve fonksiyon değişikliklerinin MD simülasyonları ile anlaşılması

Yenenler A., Gerlevik U. , Sezerman U.

Turkish Journal of Biochemistry, cilt.45, sa.2, 2020 (SCI Expanded İndekslerine Giren Dergi)

A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.

Wagner A. H. , Walsh B., Mayfield G., Tamborero D., Sonkin D., Krysiak K., et al.

Nature genetics, cilt.52, sa.4, ss.448-457, 2020 (SCI Expanded İndekslerine Giren Dergi)

Comparison of endometrial prostanoid profiles in three infertile subgroups: the missing part of receptivity?

Keles I. D. , Ulgen E., Erkan M. B. , ÇELİK S. E. , Aydin Y., ÖNEM A. N. , et al.

FERTILITY AND STERILITY, cilt.113, sa.3, ss.670-679, 2020 (SCI İndekslerine Giren Dergi)

Adaptive phenotypic modulations lead to therapy resistance in chronic myeloid leukemia cells.

Baykal-Köse S., Acikgoz E., Yavuz A., Gönül G., Ateş H., Sezerman O. U. , et al.

PloS one, cilt.15, 2020 (SCI İndekslerine Giren Dergi)

Response Assessment With Molecular Characterization of Circulating Tumor Cells and Plasma MicroRNA Profiling in Patients With Locally Advanced Breast Cancer During Neoadjuvant Chemotherapy.

Akkiprik M., Koca S., Uğurlu M., Ekren R., Peker E., Alan Ö., et al.

Clinical breast cancer, 2020 (SCI İndekslerine Giren Dergi)

SARS-CoV-2 isolation and propagation from Turkish COVID-19 patients

TaŞtan C., Yurtsever B., Sir K., Dİlek K., Demİr S., Abanuz S., et al.

TURKISH JOURNAL OF BIOLOGY, cilt.44, sa.3, ss.192-202, 2020 (SCI İndekslerine Giren Dergi)

pathfindR: An R Package for Comprehensive Identification of Enriched Pathways in Omics Data Through Active Subnetworks.

Ulgen E., Ozisik O., Sezerman O. U.

Frontiers in genetics, cilt.10, ss.858, 2019 (SCI İndekslerine Giren Dergi)

Investigation of base excision repair gene variants in late-onset Alzheimer's disease.

Ertuzun T., Semerci A., Cakir M. E. , Ekmekçioğlu A. , Gok M. O. , Soltys D. T. , et al.

PloS one, cilt.14, 2019 (SCI İndekslerine Giren Dergi)

Potential Marker Pathways in the Endometrium That May Cause Recurrent Implantation Failure.

Bastu E. , Demiral I., Gunel T., Ulgen E., Gumusoglu E., Hosseini M. K. , et al.

Reproductive sciences (Thousand Oaks, Calif.), cilt.26, sa.7, ss.879-890, 2019 (SCI Expanded İndekslerine Giren Dergi)

Whole exome sequencing-based analysis to identify DNA damage repair deficiency as a major contributor to gliomagenesis in adult diffuse gliomas.

Ülgen E., Can Ö., Bilguvar K., Oktay Y., Akyerli C. , Danyeli A. , et al.

Journal of neurosurgery, ss.1-12, 2019 (SCI Expanded İndekslerine Giren Dergi)

Comparison of Dendritic Cell Activation by Virus-Based Vaccine Delivery Vectors Emphasizes the Transcriptional Downregulation of the Oxidative Phosphorylation Pathway

Tsitoura E., Kazazi D., Oz-Arslan D. , Sever E. A. , Khalili S., Vassilaki N., et al.

HUMAN GENE THERAPY, cilt.30, sa.4, ss.429-445, 2019 (SCI İndekslerine Giren Dergi)

Identification of epilepsy related pathways using genome-wide DNA methylation measures: A trio-based approach

Ozdemir O., Egemen E., Iseri S. A. U. , SEZERMAN O. U. , Bebek N., Baykan B., et al.

PLOS ONE, cilt.14, sa.2, 2019 (SCI İndekslerine Giren Dergi)

Trichoderma Reesei Endoglukanaz I Enziminin Enzimatik Özelliklerini Selobiyohidraz I Enziminden Transfer ile Geliştirme

Sezerman O. U. , Yenenler A., Kurt H.

CATALYSTS, cilt.9, sa.2, ss.130-147, 2019 (SCI İndekslerine Giren Dergi)

A possible founder mutation in FZD6 gene in a Turkish family with autosomal recessive nail dysplasia.

Saygi C., ALANAY Y. , Sezerman U. , Yenenler A., Ozoren N.

BMC medical genetics, cilt.20, ss.15, 2019 (SCI İndekslerine Giren Dergi)

First Report and In Silico Analysis of Leishmania virus (LRV2) identified in an autochthonous Leishmania major isolate in Turkey.

Kurt Ö. , Mansur N., Çavuş İ., Özcan O., Batir M., Gündüz C., et al.

The new microbiologica, cilt.42, ss.64-67, 2019 (SCI İndekslerine Giren Dergi)

Computational drug repurposing to predict approved and novel drug-disease associations.

Khalid Z., Sezerman O. U.

Journal of molecular graphics & modelling, cilt.85, ss.91-96, 2018 (SCI İndekslerine Giren Dergi)

Ameliorative potential of Lavandula stoechas in metabolic syndrome via multitarget interactions.

Kulabas S., Ipek H., Tufekci A., Arslan S., Demirtas I., Ekren R., et al.

Journal of ethnopharmacology, cilt.223, ss.88-98, 2018 (SCI İndekslerine Giren Dergi)

Investigating the structural properties of the active conformation BTL2 of a lipase from Geobacillus thermocatenulatus in toluene using molecular dynamic simulations and engineering BTL2 via in-silico mutation.

Yenenler A., Venturini A., Burduroglu H., Sezerman O. U.

Journal of molecular modeling, cilt.24, ss.229, 2018 (SCI İndekslerine Giren Dergi)

Prediction of HIV Drug Resistance by Combining Sequence and Structural Properties.

Khalid Z., Sezerman O. U.

IEEE/ACM transactions on computational biology and bioinformatics, cilt.15, sa.3, ss.966-973, 2018 (SCI İndekslerine Giren Dergi)

Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health.

Holub P., Kohlmayer F., Prasser F., Mayrhofer M. T. , Schluender I., Martin G. M. , et al.

Biopreservation and biobanking, cilt.16, sa.2, ss.97-105, 2018 (SCI İndekslerine Giren Dergi)

Thermostability of the PYL-PP2C Heterodimer Is Dependent on Magnesium: In Silico Insights into the Link between Heat Stress Response and Magnesium Deficiency in Plants.

Timucin E. , Sezerman O. U.

Journal of chemical information and modeling, cilt.58, ss.661-672, 2018 (SCI İndekslerine Giren Dergi)

ZK DrugResist 2.0: A TextMiner to extract semantic relations of drug resistance from PubMed.

Khalid Z., Sezerman O. U.

Journal of biomedical informatics, cilt.69, ss.93-98, 2017 (SCI İndekslerine Giren Dergi)

Computational approaches for <i>de novo</i> design and redesign of metal-binding sites on proteins.

Akcapinar G. , Sezerman O. U.

Bioscience reports, cilt.37, 2017 (SCI İndekslerine Giren Dergi)

An integrative study on the impact of highly differentially methylated genes on expression and cancer etiology.

Ozer B., Sezerman U.

PloS one, cilt.12, sa.2, 2017 (SCI İndekslerine Giren Dergi)

In silico analyses and global transcriptional profiling reveal novel putative targets for Pea3 transcription factor related to its function in neurons.

KANDEMİR B., Dag U., Gungor B. B. , Durasi I. M. , Erdogan B., Sahin E., et al.

PloS one, cilt.12, sa.2, 2017 (SCI İndekslerine Giren Dergi)

Active Subnetwork GA: A Two Stage Genetic Algorithm Approach to Active Subnetwork Search

ÖZIŞIK O., Bakir-Gungor B., DİRİ B., Sezerman O. U.

CURRENT BIOINFORMATICS, cilt.12, sa.4, ss.320-328, 2017 (SCI İndekslerine Giren Dergi)

Ligand binding pocket of a novel Allatostatin receptor type C of stick insect, Carausius morosus

Sahbaz B. D. , SEZERMAN O. U. , TORUN H., BİRGÜL İYİSON N.

SCIENTIFIC REPORTS, cilt.7, 2017 (SCI İndekslerine Giren Dergi)

Analysis of the interplay between methylation and expression reveals its potential role in cancer aetiology.

Ozer B., Sezerman U.

Functional & integrative genomics, cilt.17, sa.1, ss.53-68, 2017 (SCI İndekslerine Giren Dergi)

Predicting the impact of mutations on the specific activity of Bacillus thermocatenulatus lipase using a combined approach of docking and molecular dynamics

Yukselen O., Timucin E. , Sezerman U.

JOURNAL OF MOLECULAR RECOGNITION, cilt.29, sa.10, ss.466-475, 2016 (SCI İndekslerine Giren Dergi)

RACK1 Is an Interaction Partner of ATG5 and a Novel Regulator of Autophagy

Erbil S., ORAL Ö., Mitou G., Kig C., Durmaz-Timucin E. , Guven-Maiorov E., et al.

JOURNAL OF BIOLOGICAL CHEMISTRY, cilt.291, sa.32, ss.16753-16765, 2016 (SCI İndekslerine Giren Dergi)

Design and characterizations of two novel cellulases through single-gene shuffling of Cel12A (EG3) gene from Trichoderma reseei

Yenenler A., Sezerman O. U.

PROTEIN ENGINEERING DESIGN & SELECTION, cilt.29, sa.6, ss.219-229, 2016 (SCI İndekslerine Giren Dergi)

Probing the roles of two tryptophans surrounding the unique zinc coordination site in lipase family I.5

Timucin E. , Cousido-Siah A., Mitschler A., Podjarny A., Sezerman O. U.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, cilt.84, sa.1, ss.129-142, 2016 (SCI İndekslerine Giren Dergi)

Prediction of neddylation sites from protein sequences and sequence-derived properties

Yavuz A. S. , Sozer N. B. , Sezerman O. U.

BMC BIOINFORMATICS, cilt.16, 2015 (SCI İndekslerine Giren Dergi)

A novel analysis strategy for integrating methylation and expression data reveals core pathways for thyroid cancer aetiology

Ozer B., Sezerman O. U.

BMC GENOMICS, cilt.16, 2015 (SCI İndekslerine Giren Dergi)

Assessment of global and gene-specific DNA methylation in rat liver and kidney in response to non-genotoxic carcinogen exposure

Ozden S., Kara N. T. , Sezerman O. U. , Durasi I. M. , Chen T., Demirel G., et al.

TOXICOLOGY AND APPLIED PHARMACOLOGY, cilt.289, sa.2, ss.203-212, 2015 (SCI İndekslerine Giren Dergi)

Diğer Dergilerde Yayınlanan Makaleler

Differential gene expression analysis of human cumulus cells.

Demiray S., Goker E., Tavmergen E., Yilmaz O., Calimlioglu N., Soykam H., et al.

Clinical and experimental reproductive medicine, cilt.46, ss.76-86, 2019 (ESCI İndekslerine Giren Dergi)

Expression of the Bone Morphogenetic Protein-2 (BMP2) in the Human Cumulus Cells as a Biomarker of Oocytes and Embryo Quality.

Demiray S., Yilmaz O., Goker E., Tavmergen E., Calimlioglu N., Sezerman U. , et al.

Journal of human reproductive sciences, cilt.10, ss.194-200, 2017 (Diğer Kurumların Hakemli Dergileri)

MOLECULAR DOCKING OF ANTHRANOIDS ON SOME TARGETED HUMAN PROTEINS

DEMİREZER L. Ö. , ÖZENVER N., UZUN M., YÜKSELEN O., GÜVENALP Z., SEZERMAN O. U.

Fabad Journal of Pharmaceutical Sciences, cilt.41, ss.1-16, 2017 (Diğer Kurumların Hakemli Dergileri)

A Multiplex-Urease PCR Assay for Detection of Helicobacter pylori Infection Directly from Gastric Biopsy Specimens and Comparison of Multiplex- Urease PCR Results with Rapid Urease Test and Histopathology

ÖKTEM OKULLU S. , TİFTİKÇİ A. , SARUÇ M. , ÇİÇEK B. , VARDARELİ N. E. , TÖZÜN A. N. , et al.

Clinical Microbiology: Open Access, cilt.6, 2017 (Diğer Kurumların Hakemli Dergileri)

Systems Biological Applications for Fungal Gene Expression

Akcapinar G., SEZERMAN O. U.

GENE EXPRESSION SYSTEMS IN FUNGI: ADVANCEMENTS AND APPLICATIONS, ss.385-393, 2016 (Diğer Kurumların Hakemli Dergileri)

Hakemli Kongre / Sempozyum Bildiri Kitaplarında Yer Alan Yayınlar

Rationally designed FOXO4-p53 interfering peptide selectively kills chemo-therapy-induced senescent and dormant cancer cells in vivo

Timuçin E. , Fischer J. M. , Sezerman U. , Çınaroğlu S. S.

Ending Age-Related Diseases: Investment Prospects and Advances in Research conference, New-York, Amerika Birleşik Devletleri, 11 - 12 Temmuz 2019, ss.39

Leishmaniasis in Turkey: comparison of the microbiota of the intact skin and lesion site in patients with cutaneous leishmaniasis

KURT Ö. , NIELSEN H. V. , HARMAN M., ÖZCAN O., ÇAVUŞ İ., ANDERSEN L. O. , et al.

29. ECCMID, Amsterdam, Hollanda, 13 - 16 Nisan 2019

Irritable bowel syndrome and microbiota: first clinical study on correlationsbetween gut bacteria, Dientamoeba fragilis, Blastocystis and eating habits in Turkey

KURT Ö. , Munkhtsetseg B., Stensvold C. R. , özcan o., Andersin L. O. , ÖKTEM OKULLU S. , et al.

29th ECCMID the European Congress of Clinical Microbiology and InfectiousDiseases, Amsterdam, Hollanda, 13 - 16 Nisan 2019

ENDOMETRIAL GENE EXPRESSION IN PATIENTS WITH RECURRENT IMPLANTATION FAILURE.

Demiral I., Bastu E. , Gunel T., Sezerman U. , Gumusoglu E., Ulgen E., et al.

73rd Scientific Congress and Expo of the American-Society-for-Reproductive-Medicine (ASRM), San-Antonio, Kuzey Mariana Adaları, 28 Ekim - 01 Kasım 2017, cilt.108

RAC1 SIGNALING PATHWAY IS CRUCIAL FOR ETIOLOGY OF REPEATED IMPLANTATION FAILURE (RIF).

Bastu E. , Gunel T., Sezerman O. U. , Demiral I., Gumusoglu E., Ulgen E., et al.

73rd Scientific Congress and Expo of the American-Society-for-Reproductive-Medicine (ASRM), San-Antonio, Kuzey Mariana Adaları, 28 Ekim - 01 Kasım 2017, cilt.108

Integrated Genomic and Proteomic Analyses of Multiple Sclerosis

EVEREST E., Uygunoğlu U., TÜTÜNCÜ M., SAİP S., SEZERMAN O. U. , SİVA A., et al.

American Academy of Neurology 69th Annual Meeting, 22 - 28 Nisan 2017

Characterization of the binding pocket of Allatostatin receptor type C of stick insect

DUAN ŞAHBAZ B., SEZERMAN O. U. , TORUN H., BİRGÜL İYİSON N.

Glisten Symposium, Porto, Portekiz, 29 - 31 Mart 2017

Magnesium confers stability to the PYL10 PP2C complex at high temperatures Insights from molecular dynamics simulations

SEZERMAN O. U. , TİMUÇİN E. , ÇETİN E.

2nd International Symposium on Magnesium in Crop Production, Food Quality and Human Health, Sao-Paulo, Brezilya, 4 - 06 Kasım 2014

Zinc induces self assembly of thermoalkalophilic lipases A strategy for thermostability

TİMUÇİN E. , SEZERMAN O. U.

The 28th Annual Symposium of Protein Society, San Diego, CA, Amerika Birleşik Devletleri, 27 - 30 Temmuz 2014

Modifying the chain length selectivity of Bacillus thermocatenulatus lipase through computational models of the enzyme substrate complex

TİMUÇİN E. , KUYUCAK S., SEZERMAN O. U.

İstanbul İstatistiksel Fizik Günleri, 28 - 30 Haziran 2012

Computational Models for Chain Length Selectivity of Bacillus thermocatenulatus lipase

TİMUÇİN E. , KUYUCAK S., SEZERMAN O. U.

The International Conference on Enzyme Science and Technology, Muğla, Türkiye, 31 Ekim - 04 Kasım 2011

Modification of Media pH Significantly Improves Recombinant Protein Stabilityin Pichia pastoris

GÜL Ö., TİMUÇİN E. , SEZERMAN O. U.

The International Conference on Enzyme Science and Technology, Muğla, Türkiye, 31 Ekim - 04 Kasım 2011

High throughput protein expression in Pichia pastoris using a non repressing carbon source

GÜL Ö., TİMUÇİN E. , YENİLMEZ B., SEZERMAN O. U.

The Protein Istanbul (PROTIST), İstanbul, Türkiye, 23 - 25 Nisan 2010

From in silico to in vitro Modelling and production of Trichoderma reesei endoglucanase 1 mutants in Pichia pastoris for textile biofinishing

BAYRAM AKÇAPINAR G. , GÜL Ö., SEZERMAN O. U.

III International Conference on Environmental, Industrial and Applied Microbiology “ (BioMicroWorld2009), Lizbon, Portekiz, 2 - 04 Aralık 2009

Cloning of T reesei Cellulase Components in P pastoris and Impact of Loop Mutations on EGI of T reesei

BAYRAM AKÇAPINAR G. , GÜL Ö., SEZERMAN O. U.

International Enzyme Engineering Symposium (IEES’08), Aydın, Türkiye, 1 - 05 Ekim 2008

Impact of mutations on thermal stability of T reesei EGII a computational study

BAYRAM AKÇAPINAR G. , Sezerman A. Ö. , SEZERMAN O. U.

13th European Congress on Biotechnology (Symbiosis), Barcelona, İspanya, 16 - 19 Eylül 2007, cilt.131, ss.259-260

Immobilized Glucose Oxidase GOD for better stability and reuse in biobleaching of textiles

BAYRAM AKÇAPINAR G. , DAVULCU A., SEZERMAN A. Ö. , Taralp A., SEZERMAN O. U. , ANİŞ P., et al.

7th International Symposium on Biocatalysis and Biotransformations (BIOTRANS 2005), Delft, Hollanda, 3 - 08 Temmuz 2005

Use of cellulase jeffamine networks in place of the free enzyme may alleviate the problem of lost fiber strength during textile processing

BAYRAM AKÇAPINAR G. , Duran K., Körlü Ekmekçi A., BAHTİYARİ M. İ. , Taralp A., SEZERMAN O. U.

229th National Meeting of the American-Chemical-Society, San Diego, Amerika Birleşik Devletleri, 13 - 17 Mart 2005

Treatment of viscose with crosslinked commercial cellulases

BAYRAM AKÇAPINAR G. , Duran K., BAHTİYARİ M. İ. , Körlü Ekmekçi A., Taralp A., SEZERMAN O. U.

3rd International Conference on Textile Biotechnology (INTB04), Graz, Avusturya, 13 - 16 Haziran 2004

Yayınlar & Eserler

SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

Diğer Dergilerde Yayınlanan Makaleler

Hakemli Kongre / Sempozyum Bildiri Kitaplarında Yer Alan Yayınlar