Publications

BIOSENSORS AND BIODETECTION: METHODS AND PROTOCOLS, VOL 2: ELECTROCHEMICAL, BIOELECTRONIC, PIEZOELECTRIC, CELLULAR AND MOLECULAR BIOSENSORS, 2ND EDITION, vol.1572, pp.327-348, 2017 (SCI-Expanded, Scopus)

Aggressive Test Cost Reductions Through Continuous Test Effectiveness Assessment

Arslan B., Orailoglu A.

IEEE TRANSACTIONS ON COMPUTER-AIDED DESIGN OF INTEGRATED CIRCUITS AND SYSTEMS, vol.35, no.12, pp.2093-2103, 2016 (SCI-Expanded, Scopus) Sustainable Development

West semigroups as compactifications of locally compact abelian groups

Elgun E. E.

SEMIGROUP FORUM, vol.93, no.1, pp.71-85, 2016 (SCI-Expanded, Scopus)

Systemic Low-Frequency Oscillations in BOLD Signal Vary with Tissue Type

Tong Y., Hocke L. M., Lindsey K. P., Erdogan S. B., Vitaliano G., Caine C. E., et al.

FRONTIERS IN NEUROSCIENCE, vol.10, 2016 (SCI-Expanded, Scopus)

Correcting for Blood Arrival Time in Global Mean Regression Enhances Functional Connectivity Analysis of Resting State fMRI-BOLD Signals

Erdogan S. B., Tong Y., Hocke L. M., Lindsey K. P., Frederick B. d.

FRONTIERS IN HUMAN NEUROSCIENCE, vol.10, 2016 (SCI-Expanded, Scopus)

Joint parameter and state estimation of the hemodynamic model by iterative extended Kalman smoother

Aslan S., CEMGİL A. T., Aslan M. S., TÖREYİN B. U., Akin A.

BIOMEDICAL SIGNAL PROCESSING AND CONTROL, vol.24, pp.47-62, 2016 (SCI-Expanded, Scopus)

Power-Aware Delay Test Quality Optimization for Multiple Frequency Domains

Arslan B., Orailoglu A.

IEEE TRANSACTIONS ON COMPUTER-AIDED DESIGN OF INTEGRATED CIRCUITS AND SYSTEMS, vol.35, no.1, pp.141-154, 2016 (SCI-Expanded, Scopus)

Scalable sentiment analytics

Bakirov A., Cogalmis K. N., Bulut A.

TURKISH JOURNAL OF ELECTRICAL ENGINEERING AND COMPUTER SCIENCES, vol.24, no.3, pp.1560-1570, 2016 (SCI-Expanded, Scopus, TRDizin)

Amplification-free in situ KRAS point mutation detection at 60 copies per mL in urine in a background of 1000-fold wild type

Kirimli C. E., Shih W., Shih W. Y.

ANALYST, vol.141, no.4, pp.1421-1433, 2016 (SCI-Expanded, Scopus)

Effective channels in classification and functional connectivity pattern of prefrontal cortex by functional near infrared spectroscopy signals

Einalou Z., Maghooli K., Setarehdan S. K., Akin A.

OPTIK, vol.127, no.6, pp.3271-3275, 2016 (SCI-Expanded, Scopus) Sustainable Development

Functional connectivity of the PFC via partial correlation

Dadgostar M., Setarehdan S. K., Shahzadi S., Akin A.

OPTIK, vol.127, no.11, pp.4748-4754, 2016 (SCI-Expanded, Scopus)

Analysis of task-evoked systemic interference in fNIRS measurements: Insights from fMRI

Erdogan S. B., Yucel M. A., Akin A.

NEUROIMAGE, vol.87, pp.490-504, 2014 (SCI-Expanded, Scopus)

DNA hybridization detection with 100 zM sensitivity using piezoelectric plate sensors with an improved noise-reduction algorithm

Kirimli C. E., Shih W., Shih W. Y.

ANALYST, vol.139, no.11, pp.2754-2763, 2014 (SCI-Expanded, Scopus)

Real-time, in situ DNA hybridization detection with attomolar sensitivity without amplification using (pb(Mg1/3Nb2/3)O-3)(0.65)-(PbTiO3)(0.35) piezoelectric plate sensors

Wu W., Kirimli C. E., Shih W., Shih W. Y.

BIOSENSORS & BIOELECTRONICS, vol.43, pp.391-399, 2013 (SCI-Expanded, Scopus)

Association Among SNAP-25 Gene DdeI and MnlI Polymorphisms and Hemodynamic Changes During Methylphenidate Use: A Functional Near-Infrared Spectroscopy Study

Oner O., Akin A., Herken H., Erdal M. E., Ciftci K., Ay M. E., et al.

JOURNAL OF ATTENTION DISORDERS, vol.15, no.8, pp.628-637, 2011 (SCI-Expanded, SSCI, Scopus)

Localization of an absorber in a turbid semi-infinite medium by spatially resolved continuous-wave diffuse reflectance measurements

Aksel E. B., Turkoglu A. N., Ercan A. E., Akin A.

JOURNAL OF BIOMEDICAL OPTICS, vol.16, no.8, 2011 (SCI-Expanded, Scopus)

Intact neurovascular coupling during executive function in migraine without aura: Interictal near-infrared spectroscopy study

Schytz H. W., Ciftci K., Akin A., Ashina M., Bolay H.

CEPHALALGIA, vol.30, no.4, pp.457-466, 2010 (SCI-Expanded, Scopus)

On Temporal Connectivity of PFC Via Gauss-Markov Modeling of fNIRS Signals

Aydore S., Mihcak M. K., Ciftci K., Akin A.

IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, vol.57, no.3, pp.761-768, 2010 (SCI-Expanded, Scopus)

The possible role of CO2 in producing a post-stimulus CBF and BOLD undershoot

Akın A.

Front. Neuroenergetics, vol.1, no.1, pp.1-10, 2009 (SCI-Expanded)

Crosstalk and error analysis of fat layer on continuous wave near-infrared spectroscopy measurements

Sayli O., Aksel E. B., Akin A.

JOURNAL OF BIOMEDICAL OPTICS, vol.13, no.6, 2008 (SCI-Expanded, Scopus)

Multilevel statistical inference from functional near-infrared spectroscopy data during Stroop interference

Ciftci K., Sankur B., Kahya Y. P., Akin A.

IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, vol.55, no.9, pp.2212-2220, 2008 (SCI-Expanded, Scopus)

Multimodal investigation of fMRI and fNIRS derived breath hold BOLD signals with an expanded balloon model

Emir U. E., Ozturk C., Akin A.

PHYSIOLOGICAL MEASUREMENT, vol.29, no.1, pp.49-63, 2008 (SCI-Expanded, Scopus)

Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia

Cakir T., Alsan S., Saybasili H., Akin A., Ulgen K. O.

THEORETICAL BIOLOGY AND MEDICAL MODELLING, vol.4, 2007 (SCI-Expanded, Scopus)

Extraction of cognitive activity-related waveforms from functional near-infrared spectroscopy signals

Akgul C. B., Akin A., Sankur B.

MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING, vol.44, no.11, pp.945-958, 2006 (SCI-Expanded, Scopus)

Cerebrovascular reactivity to hypercapnia in migraine patients measured with near-infrared spectroscopy

Akin A., Bilensoy D.

BRAIN RESEARCH, vol.1107, pp.206-214, 2006 (SCI-Expanded, Scopus)

Cerebrovascular dynamics in patients with migraine: Near-infrared spectroscopy study

AKIN A., Bilensoy D., Emir U., Gulsoy M., Candansayar S., Bolay H. B.

NEUROSCIENCE LETTERS, vol.400, pp.86-91, 2006 (SCI-Expanded, Scopus)

Cardiac fatigue and oxygen kinetics after prolonged exercise

Kasikcioglu E., Arslan A., Topcu B., Sayli O., Akhan H., Oflaz H., et al.

INTERNATIONAL JOURNAL OF CARDIOLOGY, vol.108, no.2, pp.286-288, 2006 (SCI-Expanded, Scopus) Sustainable Development

Spectral analysis of event-related hemodynamic responses in functional near infrared spectroscopy

Akgul C., Sankur B., Akin A.

JOURNAL OF COMPUTATIONAL NEUROSCIENCE, vol.18, no.1, pp.67-83, 2005 (SCI-Expanded, Scopus)

Papers Published in Refereed Scientific Meetings

OİP Tabanlı Makine Öğrenmesi Yaklaşımıyla Majör Depresif Bozuklukta Duyguların Tespiti

BALLI T., SÜTÇÜBAŞI B., TÜLAY E. E., METİN B.

1. Ulusal Nörogörüntüleme Kongresi, Ankara, Turkey, 7 - 09 September 2023, (Summary Text)

Full Exploitation of Process Variation Space for Continuous Delivery of Optimal Delay Test Quality

Arslan B., Orailoglu A.

18th Asia and South Pacific Design Automation Conference (ASP-DAC), Yokohama, Japan, 22 - 25 January 2013, pp.552-557, (Full Text)

Biyolojik Geri Beslemenin Koşu Esnasında Vücut Oryantasyonu ve Diz Biyomekaniğine olan Etkisinin İncelenmesi

ARGUNŞAH BAYRAM H.

21st National Biomedical Engineering Meeting (BIYOMUT), Turkey, 24 - 26 November 2017, (Full Text)

Gabor frames on Heisenberg-type group extensions

Kırımlı E. E., Oztop Kaptanoglu S.

International Workshop on Harmonic Analysis and Operator Theory, İstanbul, Turkey, 26 - 29 August 2019, pp.16, (Summary Text)

Assessment of Neurovascular Reactivity during Physiological Tasks with fNIRS

Yorgancıgil E., Akın A., Erdoğan S. B., Yukselen G.

20. Ulusal Sinirbilim Kongresi, İstanbul, Turkey, 19 - 23 October 2022, pp.150, (Summary Text)

Design parameters for wearable optical imagers

Akin A., Kim S., Pourrezaei K., Chance B., Nioka S.

Conference on Optical Tomography and Spectroscopy of Tissue IV, San-Jose, Costa Rica, 21 - 23 January 2001, vol.4250, pp.251-257, (Full Text) Sustainable Development

Performance Comparison Of 2 Different Battery Powered Mobile Antenna Analyzers And One Dedicated Mobile Open Source Qcm Platform

Kırımlı C. E., Bulut A.

2. Biyomedikal Mühendisliğinde Yenilikler Kongresi, İzmir, Turkey, 18 - 19 September 2020, pp.1-5, (Full Text)

VR in Pain Management: an fNIRS Study

Yükselen G., Öztürk Ö., Feyzioğlu Ö., Tezcan M. E., Erdoğan S. B.

5th International Neuroergonomics Conference, Bordeaux, France, 8 - 12 July 2024, (Unpublished)

Extending the applicability of parallel-serial scan designs

Arslan B., Sinanoglu O., Orailoglu A.

IEEE International Conference on Computer Design, San-Jose, Costa Rica, 11 - 13 October 2004, pp.200-203, (Full Text)

Gabor frames and their properties for some special nonabelian locally compact groups

Kırımlı E. E., Oztop Kaptanoglu S.

32. Ulusal Matematik Sempozyumu, Samsun, Turkey, 31 August - 03 September 2019, pp.107, (Summary Text)

Tracing the Best Test Mix through Multi-Variate Quality Tracking

Arslan B., Orailoglu A.

IEEE 31st VLSI Test Symposium (VTS), California, United States Of America, 29 April - 02 May 2013, (Full Text)

Extraction of cognitive activity related waveforms from functional near infrared signals

Akgül C. B., Sankur B., Akin A.

14th European Signal Processing Conference, EUSIPCO 2006, Florence, Italy, 4 - 08 September 2006, (Full Text)

Breast tumor imaging using NIR led-based handheld continuous-wave imager

Sao V., Pourrezaei K., Akin A., Ayaz H.

IEEE 29th Annual Northeast Bioengineering Conference, New-Jersey, United States Of America, 22 - 23 March 2003, pp.55-56, (Full Text) Sustainable Development

Orienting Social Event Streams as Data Stories

BULUT A.

Mining Intelligence and Knowledge Exploration, 20 December 2018, (Full Text)

Investigating Brain Hemodynamics of ADHD Patients by Functional Near Infrared Spectroscopy

Serap S., Tapsin M., Akin A.

Annual International Conference of the IEEE-Engineering-in-Medicine-and-Biology-Society, Minnesota, United States Of America, 3 - 06 September 2009, pp.3028-3030, (Full Text)

Detecting the Functionality of Executive Motor Task and Motor Imagery Through Electroencephalography (EEG)

Dumlu S. N., Sahin D., Vardar B., Akin A., DURU A. D.

22nd IEEE Signal Processing and Communications Applications Conference (SIU), Trabzon, Turkey, 23 - 25 April 2014, pp.2126-2129, (Full Text)

Investigation of the Effect of Playing Video Games on Visual Attention and Brain Hemodynamics with Functional Near Infrared Spectroscopy

Erdogan S. B., Bilgin C., Turan B., Akin A.

22nd Annual Meeting of the IEEE-Photonics-Society, Belek, Turkey, 4 - 08 October 2009, pp.272-273, (Full Text)

Delay Test Resource Allocation and Scheduling for Multiple Frequency Domains

Arslan B., Orailoglu A.

30th IEEE VLSI Test Symposium (VTS), Hawaii, United States Of America, 23 - 25 April 2012, pp.114-119, (Full Text)

Sağlıklı bireylerde duygusal yüz ifadelerinin yanıt inhibisyonu üzerindeki etkileri: pilot çalışma.

Akın A., Sütçübaşı B.

21. Ulusal Psikoloji Kongresi Antik Psişeden Bilişsel Sinirbilime, İstanbul, Turkey, 13 - 16 October 2022, pp.1, (Summary Text)

Test Cost-Test Quality Modeling For Adaptive Test

Demiray B. Z., Arslan B.

2022 IEEE INTERNATIONAL CONFERENCE ON AUTOMATION, QUALITY AND TESTING, ROBOTICS (AQTR), Cluj-Napoca, Romania, 19 - 21 May 2022, pp.1-6, (Full Text)

Kekemeliği Olan Ve Olmayan 4-6 Yaş Çocukların Duygusal Tepkiselliklerinin Olaya İlişkin Potansiyeller (Oip) Ölçümleri İle Karşılaştırılması Ve Oip Ölçümlerinin Kekemeliğin Klinik Görünümüyle İlişkisinin İncelenmesi

ALPÜRAN KOCABIYIK N., CANGİ M. E., TÜLAY E. E., DÜZENLİ ÖZTÜRK S., SÜTÇÜBAŞI B., ZENGİN BOLATKALE H.

11. Uluslararası Katılımlı Dil ve Konuşma Bozuklukları Kongresi, 19 - 21 May 2023, (Summary Text)

Effects of tailored exercise program in knee osteoa-rthritis patients with chronic pain: a FNIRS Study.

ÖZTÜRK Ö., ALGUN Z. C., ERDOĞAN S. B., BOMBACI H.

11th Congress of the European Pain Federation EFIC, 4 - 07 September 2019, (Summary Text)

Validity of fNIRS method in Assessing Cerebrovascular Reactivity in Prefrontal and Occipital Cortex of the Brain

Yorgancıgil E., Erdoğan S. B., Yukselen G., Akın A.

3rd International Webinar on Cognitive and Behavioral Neurosciences, 15 - 16 June 2022, pp.35, (Summary Text)

Changes in postural control and kinematic variables in response to ankle joint taping in professional basketball players

Yalçin B., Argunsah H.

Neuroscience 2021, Washington, United States Of America, 8 - 11 November 2021, pp.1, (Summary Text)

EEG Based Mental Workload Estimation System

Cebeci B., Akan A., Sutcubasi B.

28th Signal Processing and Communications Applications Conference (SIU), ELECTR NETWORK, 5 - 07 October 2020, (Full Text)

Klinikte Biyolojik Geri Bildirim Uygulamaları

ARGUNŞAH BAYRAM H.

21. Biyomedikal Bilim ve Teknoloji Sempozyumu, Turkey, 15 - 16 December 2018, (Summary Text)

Books & Book Chapters

Pathological Diagnosis with Scanning Acoustic Microscopy and Photoacoustic Microscopy

Tanoren B.

in: Emerging Trends in Ultrasound Imaging, Dave Fornell, Editor, OpenAccess e Books, Nevada, pp.1-8, 2020

Biomimetics- Nature Based Innovation Application of Biomimetics in the Design of Medical Devices

Argunşah Bayram H.

in: Biomimetics: Nature-Based Innovation, Joseph Bar-Kohen, Editor, CRC, New York , New-York, pp.445-460, 2011

Clinical Innovation at Acibadem Biodesign Center

Akin A., Dirilen E. G., Kurt K., Bal E.

in: Novel Innovation Design for the Future of Health, Michael Friebe, Editor, Springer Nature, Basel, pp.537-547, 2022 Sustainable Development

Sağlıkta Yapay Zekanın Geleceği

Bayram M. S. B., Akın A.

in: Sağlık Bilimlerinde Yapay Zeka, melih bulut,nevit dilmen,gökhan bora esmer,murat gezer,çiğdem selçukcan erol,leyla türker şener, Editor, Çağlayan Kitabevi, İstanbul, pp.280-292, 2019

Indexing and Querying Data Streams

Bulut A.

in: Data Streams, Charu C. Aggarwal, Editor, Springer-Verlag , New York, pp.237-259, 2006

Creating Ad Campaigns Using Generative AI

Bulut A., Arslan B.

in: Applications of Generative AI, Zhihan Lyu, Editor, Springer Nature, Zug, pp.22-36, 2024

Duygulara Nöropsikolojik Yaklaşım

Sütçübaşı B.

in: NÖROPSİKOLOJİ- Teoriden Pratiğe Ölçme ve Değerlendirme, Ceren Hıdıroğlu Ongun,Serra Şandor, Editor, Nobel Yayın Dağıtım, İstanbul, pp.303-320, 2024

Sağlıkta Yapay Zekanın Geleceği

BAYRAM M. S. B., AKIN A.

in: Sağlık Bilimlerinde Yapay Zeka, Melih Bulut, Editor, Çağlayan Kitabevi, pp.281-292, 2019

Ben Yapmadım Beynim mi Yaptırdı? Özgür iradeye nörofelsefi bir bakış

Akın A.

Zoe Yayıncılık, İstanbul, 2024

Piezoelectric Plate Sensor (PEPS) for Analysis of Specific KRAS Point Mutations at Low Copy Number in Urine Without DNA Isolation or Amplification

KIRIMLI C. E., Shih W. H., Shih W. Y.

in: Biosensors and BiodetectionMethods and Protocols, Volume 2: Electrochemical, Bioelectronic, Piezoelectric, Cellular and Molecular Biosensors, Ben Prickril, Avraham Rasooly, Editor, Humana Press, New York, NY, New-York, pp.327-348, 2019

Other Publications

Beyin Bilgisayar Arayüzlerinde Yeni Bir Teknoloji: İşlevsel Yakın Kızılaltı Spektroskopi (STM BLOG)

Erdoğan S. B.

Technical Report, pp.1-7, 2019 Sustainable Development