Assoc. Prof. ZEYNEP ASLIHAN DURER

Publication Network

Articles 17

1. Insights into the solution structure of the actin-binding tail domain of metavinculin by small angle X-ray scattering and molecular dynamics simulations

Oztug Durer Z. A., İnce H. İ., DÜVENCİ Z. Ş., Timucin E., Gräwert T., ORUN O., et al.

International Journal of Biological Macromolecules , vol.319, 2025 (SCI-Expanded, Scopus)

2. G protein-coupled receptor-mediated autophagy in health and disease

ÖZ ARSLAN D., DURER Z. A., KAN B.

BRITISH JOURNAL OF PHARMACOLOGY , vol.182, no.14, pp.3151-3162, 2025 (SCI-Expanded, Scopus)

3. Proteomic investigation of acute and chronic hypoxia/reoxygenation responsive proteins and pathways in H9C2 cardiomyoblasts

Oztug M., Kilinc E., DURER Z. A., Baloglu E.

TURKISH JOURNAL OF BIOLOGY , vol.48, no.3, pp.192-202, 2024 (SCI-Expanded, Scopus, TRDizin)

4. Identification of Protein Interacting Partners of Na+/K+-ATPase Pump alpha 1 Subunit by Proteomic and Bioinformatic Analysis in InVitro Hypoxic Cardiomyocytes

BALOĞLU E., Gencay G., Gurler B., TİMUÇİN E., DURER Z. A., KILINÇ E.

ACTA PHYSIOLOGICA , pp.58-59, 2023 (SCI-Expanded, Scopus)

5. Cloning, Expression, and Characterization of Serine Protease AprX from Geobacillus thermoleovorans ARTRW1

Oztug M., Durer Z. A., Yetke H. I., Asicioglu M., Akgoz M., Gül Karagüler N.

Industrial Biotechnology , vol.18, no.3, pp.176-187, 2022 (Scopus) Sustainable Development

6. D-loop Dynamics and Near-Atomic-Resolution Cryo-EM Structure of Phalloidin-Bound F-Actin.

Das S., Ge P., Oztug D., Grintsevich E., Zhou Z., Reisler E.

Structure (London, England : 1993) , vol.28, no.5, pp.586, 2020 (SCI-Expanded, Scopus)

7. Distance sensitive D-loop dynamics and near-atomic resolution of F-actin phalloidin structure by cryoEM

Das S., Ge P., Durer Z. A., Grintsevich E. E., Zhou Z. H., Reisler E.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS , vol.37, pp.2-3, 2019 (SCI-Expanded, Scopus)

8. <i>Drosophila</i> and human FHOD family formin proteins nucleate actin filaments.

Patel A., Oztug D., Van L., Bremer K., Quinlan M.

The Journal of biological chemistry , vol.293, pp.532-540, 2018 (SCI-Expanded, Scopus)

9. Clinical applications of MALDI imaging technologies in cancer and neurodegenerative diseases

Ucal Y., Durer Z. A., Atak H., Kadioglu E., Sahin B., COŞKUN A., et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS , vol.1865, no.7, pp.795-816, 2017 (SCI-Expanded, Scopus) Sustainable Development

10. Analysis of Changes in Parathyroid Hormone and 25 (OH) Vitamin D Levels with Respect to Age, Gender and Season: A Data Mining Study.

Serdar M. A., Can B. B., Kilercik M., Durer Z. A., Aksungar F., SERTESER M., et al.

Journal of medical biochemistry , vol.36, no.1, pp.73-83, 2017 (SCI-Expanded, Scopus)

11. Metavinculin Tunes the Flexibility and the Architecture of Vinculin-Induced Bundles of Actin Filaments.

Oztug D., McGillivary R., Kang H., Elam W., Vizcarra C., Hanein D., et al.

Journal of molecular biology , vol.427, pp.2782-98, 2015 (SCI-Expanded, Scopus)

12. Cryo-EM reveals different coronin binding modes for ADP- and ADP-BeFx actin filaments.

Ge P., Durer Z. A., Kudryashov D., Zhou Z., Reisler E.

Nature structural & molecular biology , vol.21, pp.1075-81, 2014 (SCI-Expanded, Scopus)

13. Structural states and dynamics of the D-loop in actin.

Durer Z. A., Kudryashov D., Sawaya M., Altenbach C., Hubbell W., Reisler E.

Biophysical journal , vol.103, pp.930-9, 2012 (SCI-Expanded, Scopus)

14. Myosin binding surface on actin probed by hydroxyl radical footprinting and site-directed labels.

Oztug D., Kamal J., Benchaar S., Chance M., Reisler E.

Journal of molecular biology , vol.414, pp.204-16, 2011 (SCI-Expanded, Scopus)

15. F-actin structure destabilization and DNase I binding loop: fluctuations mutational cross-linking and electron microscopy analysis of loop states and effects on F-actin.

Oztug D., Diraviyam K., Sept D., Kudryashov D., Reisler E.

Journal of molecular biology , vol.395, pp.544-57, 2010 (SCI-Expanded, Scopus)

16. Loss of metal ions, disulfide reduction and mutations related to familial ALS promote formation of amyloid-like aggregates from superoxide dismutase.

Oztug D., Cohlberg J., Dinh P., Padua S., Ehrenclou K., Downes S., et al.

PloS one , vol.4, 2009 (SCI-Expanded, Scopus)

17. Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin.

Kudryashov D., Durer Z. A., Ytterberg A., Sawaya M., Pashkov I., Prochazkova K., et al.

Proceedings of the National Academy of Sciences of the United States of America , vol.105, pp.18537-42, 2008 (SCI-Expanded, Scopus)

Papers Presented at Peer-Reviewed Scientific Conferences 42

1. Understanding the Conformational Dynamics of the Metavinculin Tail: An Integrative SAXS and Modeling Approach

Durer Z. A., Yetke H. İ., Düvenci Z. Ş., Timuçin E., Gräwert T., Orun O., et al.

15th EBSA congress, June 30 - July 4, 2025, Rome, Italy - Abstracts, Rome, Italy, 30 June - 04 July 2025, vol.54, pp.45, (Summary Text)

2. Signaling Pathways Activated by the Orphan G Protein-Coupled Receptor GPR37

Erol G., Öz Arslan D., Durer Z. A., Kan B.

COST-IMMUPARKNET 3 rd Annual Conference , Lisbon, Portugal, 5 - 07 April 2025, pp.55, (Summary Text)

3. Signaling Pathways Activated by the Orphan G Protein-Coupled Receptor GPR372024 Molbiyokon’24 Izmir /Turkey

Erol G., Öz Arslan D., Durer Z. A., Kan B.

9th International Congress of the Molecular Biology Association of Turkey, İzmir, Turkey, 12 - 14 September 2024, pp.193-194, (Summary Text)

4. Understanding the structural dynamics of metavinculin’s tail domain: insights from MDsimulations

Durer Z. A., Timuçin E.

48th FEBS Congress, Milan, Italy, 29 June - 03 July 2024, vol.14, no.1014, pp.98-99, (Summary Text)

5. A Structural Model of the G Protein-Coupled Receptor 37 and A2A Adenosine Receptor Heteromer

Durer Z. A., Öz Arslan D., Kan B., Timuçin E.

2nd Immuparknet Conference , Sevilla, Spain, 15 - 17 June 2023, (Unpublished)

6. A Structural Model of the Heteromer between G Protein-Coupled Receptor 37 and A2A Adenosine Receptor

Durer Z. A., Kan B., Öz Arslan D., Timuçin E.

5th International 34th National Biophysics Congress September 6-9, 2023, İzmir, Turkey, 6 - 09 September 2023, (Unpublished)

7. Characterization of actin-binding tail structure and dynamics in cardiomyopathy associated metavinculin mutants

Durer Z. A., Gräwert T., Yetke H. İ., Bulut A. S., Timuçin E., Sayers Z., et al.

1st ML4NGP meeting on Machine Learning and Non-globular proteins, Bratislava, Slovakia, 5 - 07 July 2023, (Unpublished)

8. Characterization of actin-binding tail structure and dynamics in metavinculin mutants associated with cardiomyopathy

DURER Z. A., Grawert T., Yetke H. I., Bulut A. S., TİMUÇİN E., Sayers Z., et al.

14th European Biophysics Congress (EBSA), Stockholm, Sweden, 31 July - 04 August 2023, (Summary Text)

9. GPR37 structure and function in autophagy

Kan B., Durer Z. A., Öz Arslan D., Timuçin E.

ERNEST 8th and Final Meeting GPCR Structure and Function: The present and perspectives for the future, Heraklion, Greece, 3 - 07 May 2023, pp.24, (Summary Text)

10. A Structural Model of the G Protein-Coupled Receptor 37 and A2A Adenosine Receptor Heteromer

Durer Z. A., Kan B., Öz Arslan D., Timuçin E.

ERNEST 8th and Final Meeting GPCR Structure and Function: The Present and perspectives for the future, Heraklion, Greece, 3 - 07 May 2023, pp.78, (Summary Text)

11. Identification of Protein Interacting Partners of Na+/K+-ATPase Pump alpha 1 Subunit by Proteomic and Bioinformatic Analysis in In Vitro Hypoxic Cardiomyocytes

BALOĞLU E., Gençay G., Gürler B., TİMUÇİN E., DURER Z. A., Kılınç E.

47.Ulusal Fizyoloji Kongresi, United States Of America, 01 November 2022, vol.237, pp.58-59, (Summary Text)

12. An Investigation into the effect of the Different Vinculin Isoforms in the Morphology of H9C2 Cells

Kasap Can H., Öz Arslan D., Kan B., Durer Z. A.

4. Uluslararası-33. Ulusal Biyofizik Kongresi, Adıyaman, Turkey, 31 August - 03 September 2022, (Unpublished)

13. The relationship between overexpression of the orphan receptor GPR37 and autophagy in SH-SY5Y and Hep3B cells.

Açıkgöz D., Öz Arslan D., Durer Z. A., Kan B.

Fifth ERNEST Meeting COST Action CA18133. Bridging Perspectives and Networking in Signal Transduction Research, Bari, Italy, 4 - 08 October 2021, pp.56, (Summary Text)

14. Proteomic investigation of acute and chronic hypoxia reoxygenation responsive hemostatic proteins and pathways in H9C2 cardiomyocytes

Kılınç E., DURER Z. A., ÖZTUĞ KILINÇ M., BALOĞLU E.

4.Uluslararası 33.Ulusal Biyofizik Kongresi, Adıyaman, Turkey, 31 August 2022, (Summary Text)

15. Parkinson ile İlişkili Yetim G Protein Kenetli Reseptör GPR37’nin Otofaji ile Bağlantısının SH-SY5Y ve Hep3B Hücrelerinde İncelenmesi

Öz Arslan D., Demir T., Açıkgöz D., Durer Z. A., Kan B.

32. Ulusal Biyofizik Kongresi, İstanbul, Turkey, 17 - 19 November 2021, pp.66, (Summary Text)

16. Kardiyomiyopati ile İlişkili Vinkülin İzoformlarının Aktin’e Bağlanan Kuyruk Kısımlarının Yapısal ve Biyofiziksel Analizi

Durer Z. A., Gräwert T., Yetke H. İ., Sayers Z., Kan B.

32. Ulusal Biyofizik Kongresi , İstanbul, Turkey, 17 - 19 November 2021, pp.62, (Summary Text)

17. An Interactome of ATG3 in a hepatoma celi line

Öz Arslan D., Açıkgöz D., Kan B., Oztug M., Bozkurt S., Timuçin E., et al.

Autophagy UK Meeting , London, England, 26 - 27 May 2021, pp.29, (Summary Text)

18. Investigation of new binding partners for ATG3 protein in a hepatoma cell line

Öz Arslan D., Acikgoz D., Kan B., Oztug M., Timuçin E., Durer Z. A.

THIRD ERNEST MEETING - Online Signal transduction: From the genomic to the systems level, 12 - 14 October 2020, pp.17, (Summary Text)

19. Unraveling New Binding Partners of ATG3 Protein in HEP3B Cells

Öz Arslan D., Açıkgöz D., Kan B., Öztuğ M., Durer Z. A.

31. Ulusal Biyofizik Kongresi, Adana, Turkey, 9 - 12 October 2019, pp.29, (Summary Text) Sustainable Development

20. Evaluation of different transfection agents for expression of fluorescently labeled autophagy and mitophagy genes in hepatoma cells

Kan B., Öz Arslan D., Durer Z. A.

31. Ulusal Biyofizik Kongresi, Adana, Turkey, 9 - 12 October 2019, pp.41, (Summary Text)

21. Biophysical characterization of cardiomyopathy-related vinculin isoforms and their interactions with actin filaments

Yetke H. İ., Kan B., Durer Z. A.

31. Ulusal Biyofizik Kongresi, Adana, Turkey, 9 - 12 October 2019, pp.15-16, (Summary Text)

22. Unraveling New Binding Partners of Atg3 in Autophagy and Mitophagy

Öz Arslan D., Acikgoz D., Kan B., Durer Z. A.

EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, Madrid, Spain, 20 - 24 July 2019, vol.48, pp.147, (Summary Text)

23. Unraveling New Binding Partners of Atg3 in Autophagy and Mitophagy

Oz-Arslan D., Acikgoz D., Kan B., Durer Z. A.

Joint 12th EBSA European Biophysics Congress / 10th IUPAP International Conference on Biological Physics (ICBP), Madrid, Spain, 20 - 24 July 2019, vol.48, (Summary Text)

24. Biochemical and structural characterization of the propeptide of pregnancy-associated plasma protein A and its cellular effects

DURER Z. A., Bozkurt S., ÖZ ARSLAN D., TİMUÇİN E., Vizcarra C. L., COSKUN A.

Joint 12th EBSA European Biophysics Congress / 10th IUPAP International Conference on Biological Physics (ICBP), Madrid, Spain, 20 - 24 July 2019, (Summary Text)

25. Unraveling New Binding Partners of Atg3 in Autophagy and Mitophagy

Öz Arslan D., Açıkgöz D., Kan B., Durer Z. A.

Joint 12th EBSA European Biophysics Congress / 10th IUPAP International Conference on Biological Physics (ICBP), Madrid, Spain, 20 - 24 July 2019, vol.48, pp.147, (Summary Text)