Yayınlar & Eserler

Yayın Ağı
SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

Computational modeling of the anti-inflammatory complexes of IL37

Sardag I., Duvenci Z. S., Belkaya S., TİMUÇİN E.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING , cilt.136, 2025 (SCI-Expanded) identifier identifier identifier

A Novel NUP85 Variant Expanding the Phenotypic Spectrum of NUP85-Associated Steroid-Resistant Nephrotic Syndrome.

Şükür E. D. K., Timucin E., Baştuğ T., Ozaltin F.
Clinical genetics , 2025 (SCI-Expanded) identifier

AFFIPred: AlphaFold2 structure-based Functional Impact Prediction of missense variations

Pir M. S., TİMUÇİN E.
PROTEIN SCIENCE , cilt.34, sa.2, 2025 (SCI-Expanded) identifier identifier identifier

Rational design of monomeric IL37 variants guided by stability and dynamical analyses of IL37 dimers

Sardag I., Duvenci Z. S., Belkaya S., TİMUÇİN E.
Computational and Structural Biotechnology Journal , cilt.23, ss.1854-1863, 2024 (SCI-Expanded) identifier

Identification of interaction partners of outer inflammatory protein A: Computational and experimental insights into how Helicobacter pylori infects host cells

Öktem Okullu S., Timuçin E.
PLOS ONE , cilt.19, sa.10, ss.19-24, 2024 (SCI-Expanded)

Var3PPred: variant prediction based on 3-D structure and sequence analyses of protein-protein interactions on autoinflammatory diseases

Bülbül A., TİMUÇİN E., TİMUÇİN A. C., SEZERMAN O. U., TAHİR TURANLI E.
PeerJ , cilt.12, sa.5, 2024 (SCI-Expanded) identifier

Effect of the switch status of Helicobacter pylori outer inflammatory protein A on gastric diseases

ÖKTEM OKULLU S., Karaman T., Akcelik-Deveci S., TİMUÇİN E., SEZERMAN O. U., Mansur-Ozen N., et al.
AMB EXPRESS , cilt.13, sa.1, 2023 (SCI-Expanded) identifier identifier identifier

Computational completion of the Aurora interaction region of N-Myc in the Aurora a kinase complex

Altiner P., Çınaroğlu S. S., Timuçin A. C., Timucin E.
SCIENTIFIC REPORTS , cilt.13, sa.1, 2023 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Follicular homocysteine as a marker of oocyte quality in PCOS and the role of micronutrients

Kucuk T., Horozal P. E., Karakulak A., TİMUÇİN E., Dattilo M.
JOURNAL OF ASSISTED REPRODUCTION AND GENETICS , cilt.40, sa.8, ss.1933-1941, 2023 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier identifier

Identification of Protein Interacting Partners of Na+/K+-ATPase Pump alpha 1 Subunit by Proteomic and Bioinformatic Analysis in InVitro Hypoxic Cardiomyocytes

BALOĞLU E., Gencay G., Gurler B., TİMUÇİN E., DURER Z. A., KILINÇ E.
ACTA PHYSIOLOGICA , ss.58-59, 2023 (SCI-Expanded) identifier

A small non-interface surface epitope in human IL18 mediates the dynamics and self-assembly of IL18-IL18BP heterodimers

Yazici Y. Y., Belkaya S., TİMUÇİN E.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL , cilt.21, ss.3522-3531, 2023 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Evaluation of AlphaFold structure-based protein stability prediction on missense variations in cancer

Karakoyun H. K., Yuksel S. K., Amanoglu I., Naserikhojasteh L., Yesilyurt A., Yakicier C., et al.
FRONTIERS IN GENETICS , cilt.14, 2023 (SCI-Expanded) identifier identifier identifier

Brave new surfactant world revisited by thermoalkalophilic lipases: computational insights into the role of SDS as a substrate analog

Shehata M., Unlu A., Iglesias-Fernandez J., Osuna S., SEZERMAN O. U., TİMUÇİN E.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS , cilt.25, sa.3, ss.2234-2247, 2022 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

SERUM ESTROGEN AND PROGESTERONE LEVELS AS PREDICTORS OF OUTCOME IN WOMEN UNDERGOING ARTIFICIALLY PREPARED FROZEN EMBRYO TRANSFER CYCLES

Yuceturk A., Cakıroglu A. Y., Kopuk S. Y., Utkan Korun Z. E., Karaosmanoglu O., Yazicioglu C., et al.
FERTILITY AND STERILITY , cilt.118, sa.4, ss.284-285, 2022 (SCI-Expanded)

Modeling and dynamical analysis of the full-length structure of factor XII with zinc.

Kılınç E., Can Timucin A. C., Selim Cinaroglu S., Timucin E.
Journal of molecular modeling , cilt.28, sa.5, ss.129, 2022 (SCI-Expanded) identifier identifier identifier

Toward Compilation of Balanced Protein Stability Data Sets: Flattening the Delta Delta G Curve through Systematic Enrichment

Kebabci N., TİMUÇİN A. C., TİMUÇİN E.
JOURNAL OF CHEMICAL INFORMATION AND MODELING , cilt.62, sa.5, ss.1345-1355, 2022 (SCI-Expanded) identifier identifier identifier

Molecular modelling of the FOXO4-TP53 interaction to design senolytic peptides for the elimination of senescent cancer cells.

Le H. H., Cinaroglu S. S., Manalo E. C., Ors A., Gomes M. M., Duan Sahbaz B., et al.
EBioMedicine , cilt.73, ss.103646, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier

Bridging the Bridging Imidazolate in the Bimetallic Center of the Cu/Zn SOD1 and ALS

TİMUÇİN A. C., Cinaroglu S. S., SEZERMAN O. U., TİMUÇİN E.
FRONTIERS IN CHEMISTRY , cilt.9, 2021 (SCI-Expanded) Creative Commons License Sürdürülebilir Kalkınma identifier identifier identifier

Completing the Partially Resolved Complex Crystal Structure of Aurora Kinase A-/-N-MYC by Molecular Modeling

Altiner P., Cinaroglu S. S., TİMUÇİN E.
BIOPHYSICAL JOURNAL , cilt.120, sa.3, 2021 (SCI-Expanded) identifier

Brave New Surfactant World Revisited by Lipases: Activation and Unfolding in SDS

Shehata M., Unlu A., TİMUÇİN E.
BIOPHYSICAL JOURNAL , cilt.120, sa.3, 2021 (SCI-Expanded) identifier

Comprehensive evaluation of the MM-GBSA method on bromodomain-inhibitor sets.

Çınaroğlu S., Timuçin E.
Briefings in bioinformatics , cilt.21, ss.2112-2125, 2020 (SCI-Expanded) identifier identifier identifier

Lipase and Water in a Deep Eutectic Solvent: Molecular Dynamics and Experimental Studies of the Effects of Water-In-Deep Eutectic Solvents on Lipase Stability.

Shehata M., Unlu A., Sezerman U., Timucin E.
The journal of physical chemistry. B , cilt.124, ss.8801-8810, 2020 (SCI-Expanded) identifier identifier identifier

Understanding thermal and organic solvent stability of thermoalkalophilic lipases: insights from computational predictions and experiments.

Shehata M., Timucin E., Venturini A., Sezerman O. U.
Journal of molecular modeling , cilt.26, ss.122, 2020 (SCI-Expanded) identifier identifier identifier

Translation and cross-cultural adaptation of theextended version of the Nordic musculoskeletal questionnaireinto Turkish

Alaca N., Bayraktar E. E., Dönmez A. İ., Timuçin E.
JOURNAL OF MUSCULOSKELETAL NEURONAL INTERACTIONS , cilt.19, sa.4, ss.472-481, 2019 (SCI-Expanded)

Comparative Assessment of Seven Docking Programs on a Nonredundant Metalloprotein Subset of the PDBbind Refined.

Çınaroğlu S., Timuçin E.
Journal of chemical information and modeling , cilt.59, ss.3846-3859, 2019 (SCI-Expanded) identifier identifier identifier

Insights into an alternative benzofuran binding mode and novel scaffolds of polyketide synthase 13 inhibitors.

Çınaroğlu S., Timuçin E.
Journal of molecular modeling , cilt.25, ss.130, 2019 (SCI-Expanded) identifier identifier identifier

In silico identification of inhibitors targeting N-Terminal domain of human Replication Protein A.

Çınaroğlu S., Timuçin E.
Journal of molecular graphics & modelling , cilt.86, ss.149-159, 2019 (SCI-Expanded) identifier identifier identifier

Thermostability of the PYL-PP2C Heterodimer Is Dependent on Magnesium: In Silico Insights into the Link between Heat Stress Response and Magnesium Deficiency in Plants.

Timucin E., Sezerman O. U.
Journal of chemical information and modeling , cilt.58, ss.661-672, 2018 (SCI-Expanded) identifier identifier identifier

Predicting the impact of mutations on the specific activity of Bacillus thermocatenulatus lipase using a combined approach of docking and molecular dynamics

Yukselen O., Timucin E., Sezerman U.
JOURNAL OF MOLECULAR RECOGNITION , cilt.29, sa.10, ss.466-475, 2016 (SCI-Expanded) identifier identifier identifier

RACK1 Is an Interaction Partner of ATG5 and a Novel Regulator of Autophagy

Erbil S., ORAL Ö., Mitou G., Kig C., Durmaz-Timucin E., Guven-Maiorov E., et al.
JOURNAL OF BIOLOGICAL CHEMISTRY , cilt.291, sa.32, ss.16753-16765, 2016 (SCI-Expanded) identifier identifier identifier

Probing the roles of two tryptophans surrounding the unique zinc coordination site in lipase family I.5

Timucin E., Cousido-Siah A., Mitschler A., Podjarny A., Sezerman O. U.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS , cilt.84, sa.1, ss.129-142, 2016 (SCI-Expanded) identifier identifier identifier

Zinc Modulates Self-Assembly of Bacillus thermocatenulatus Lipase

Timucin E., Sezerman O. U.
BIOCHEMISTRY , cilt.54, sa.25, ss.3901-3910, 2015 (SCI-Expanded) identifier identifier identifier

Direct in vitro selection of titanium-binding epidermal growth factor

Tada S., Timucin E., Kitajima T., Sezerman O. U., Ito Y.
BIOMATERIALS , cilt.35, sa.11, ss.3497-3503, 2014 (SCI-Expanded) identifier identifier identifier

The Conserved Lid Tryptophan, W211, Potentiates Thermostability and Thermoactivity in Bacterial Thermoalkalophilic Lipases

Timucin E., Sezerman O. U.
PLOS ONE , cilt.8, sa.12, 2013 (SCI-Expanded) Creative Commons License identifier identifier identifier

Modifying the catalytic preference of tributyrin in Bacillus thermocatenulatus lipase through in-silico modeling of enzyme-substrate complex

Durmaz E., Kuyucak S., Sezerman U.
PROTEIN ENGINEERING DESIGN & SELECTION , cilt.26, sa.5, ss.325-333, 2013 (SCI-Expanded) Creative Commons License identifier identifier identifier

The drought response displayed by a DRE-binding protein from Triticum dicoccoides.

Lucas S., Durmaz E., Akpınar B., Budak H.
Plant physiology and biochemistry : PPB , cilt.49, ss.346-51, 2011 (SCI-Expanded) Sürdürülebilir Kalkınma identifier identifier identifier
Diğer Dergilerde Yayınlanan Makaleler

Yeniden Yaralanma Kaygısı Envanterinin Türkçe Çevrimi ve Psikometrik Özelliklerinin Değerlendirilmesi

ALACA N., FEYZİOĞLU Ö., SELAMİ M., TİMUÇİN E.
Türkiye Klinikleri Spor Bilimleri Dergisi , cilt.12, sa.3, ss.339-348, 2020 (Hakemli Dergi) identifier
Hakemli Kongre / Sempozyum Bildiri Kitaplarında Yer Alan Yayınlar

Identification of Protein Interacting Partners of Na+/K+-ATPase Pump alpha 1 Subunit by Proteomic and Bioinformatic Analysis in In Vitro Hypoxic Cardiomyocytes

BALOĞLU E., Gençay G., Gürler B., TİMUÇİN E., DURER Z. A., Kılınç E.
47.Ulusal Fizyoloji Kongresi, Amerika Birleşik Devletleri, 01 Kasım 2022, cilt.237, ss.58-59

SERUM ESTROGEN AND PROGESTERONE LEVELS AS PREDICTORS OF OUTCOME LN WOMEN UNDERGOING ARTIFICIALLY PREPARED FROZEN EMBRYO TRANSFER CYCLES

Yuceturk A., CAKIROGLU A. Y., Kopuk S. Y., Korun Z. E. U., Karaosmanoglu O., Yazicioglu C., et al.
78th Annual Scientific Congress and Expo of the American-Society-for-Reproductive-Medicine (ASRM), California, Amerika Birleşik Devletleri, 22 - 26 Ekim 2022 identifier

Molecular D ocking and D ynamic studies for H.pylori OipA P ossible I nteraction Partner on G astric E pithelial C ells

Akçelik Deveci s., TİMUÇİN E., Mansur Özen N., ÖKTEM OKULLU S.
8 International Congress of the Molecular Biology Association of Turkey, İstanbul, Türkiye, 09 Haziran 2022

Rationally designed FOXO4-p53 interfering peptide selectively kills chemo-therapy-induced senescent and dormant cancer cells in vivo

Timuçin E., Fischer J. M., Sezerman U., Çınaroğlu S. S.
Ending Age-Related Diseases: Investment Prospects and Advances in Research conference, New-York, Amerika Birleşik Devletleri, 11 - 12 Temmuz 2019, ss.39 Sürdürülebilir Kalkınma

Biochemical and structural characterization of the propeptide of pregnancy-associated plasma protein A and its cellular effects

DURER Z. A., Bozkurt S., ÖZ ARSLAN D., TİMUÇİN E., Vizcarra C. L., COSKUN A.
Joint 12th EBSA European Biophysics Congress / 10th IUPAP International Conference on Biological Physics (ICBP), Madrid, İspanya, 20 - 24 Temmuz 2019 identifier

Comparative Assessment of Molecular Docking for the Ligands Closely Interacting with Metals in Metalloproteins

Timuçin E., Çınaroğlu S. S.
Organalle Biogenesis and Function in Cell Physiology and in Disease Conference, İstanbul, Türkiye, 27 - 29 Mayıs 2019

Magnesium confers stability to the PYL10 PP2C complex at high temperatures Insights from molecular dynamics simulations

SEZERMAN O. U., TİMUÇİN E., ÇETİN E.
2nd International Symposium on Magnesium in Crop Production, Food Quality and Human Health, Sao-Paulo, Brezilya, 4 - 06 Kasım 2014

Zinc induces self assembly of thermoalkalophilic lipases A strategy for thermostability

TİMUÇİN E., SEZERMAN O. U.
The 28th Annual Symposium of Protein Society, San Diego, CA, Amerika Birleşik Devletleri, 27 - 30 Temmuz 2014

Zinc Induces Self-Assembly Of Bacterial Thermoalkalophilic Lipases: A Strategy For Thermostability

Timucin E., Sezerman O. U.
28th Annual Symposium of the Protein-Society, California, Amerika Birleşik Devletleri, 27 - 30 Temmuz 2014, cilt.23, ss.134 identifier

Modifying the chain length selectivity of Bacillus thermocatenulatus lipase through computational models of the enzyme substrate complex

TİMUÇİN E., KUYUCAK S., SEZERMAN O. U.
İstanbul İstatistiksel Fizik Günleri, 28 - 30 Haziran 2012

Modification of Media pH Significantly Improves Recombinant Protein Stabilityin Pichia pastoris

GÜL Ö., TİMUÇİN E., SEZERMAN O. U.
The International Conference on Enzyme Science and Technology, Muğla, Türkiye, 31 Ekim - 04 Kasım 2011

Computational Models for Chain Length Selectivity of Bacillus thermocatenulatus lipase

TİMUÇİN E., KUYUCAK S., SEZERMAN O. U.
The International Conference on Enzyme Science and Technology, Muğla, Türkiye, 31 Ekim - 04 Kasım 2011

Treatment of water polluted with antibiotic resistant bacteria via chlorine and ozone disinfection

ÖNCÜ BİLGİN N., TİMUÇİN E., BALCIOĞLU I.
Water Contamination Emergencies Conference, Mülheim, Almanya, 11 - 13 Ekim 2010

High throughput protein expression in Pichia pastoris using a non repressing carbon source

GÜL Ö., TİMUÇİN E., YENİLMEZ B., SEZERMAN O. U.
The Protein Istanbul (PROTIST), İstanbul, Türkiye, 23 - 25 Nisan 2010

Isolation and cloning of dehydration responsive element binding protein DREB from Triticum dicoccoides

TİMUÇİN E., BUDAK H.
The 7th Plant Genomics European Meeting (PGEM7), Albena, Bulgaristan, 24 - 27 Eylül 2008

Expression and Cellular Localization of ZIP1 Transporter Under Zinc Deficiency in Wild Emmer Wheat International Durum Wheat Symposium

TİMUÇİN E., ÇORUH C., DİNLER DOĞANAY G., GRUSAK M., PELEG Z., SARANGA Y., et al.
From Seed to Pasta: The Durum Wheat Chain, Bologna, İtalya, 30 Haziran - 03 Temmuz 2008
Metrikler

Yayın

69

Atıf (WoS)

344

H-İndeks (WoS)

11

Atıf (Scopus)

443

H-İndeks (Scopus)

12

Atıf (Scholar)

26

H-İndeks (Scholar)

2

Atıf (Diğer Toplam)

2

Proje

8

Fikri Mülkiyet

4

Tez Danışmanlığı

9

Açık Erişim

4
BM Sürdürülebilir Kalkınma Amaçları