Assoc. Prof. Emel TİMUÇİN

Publication Network

Articles Published in Journals That Entered SCI, SSCI and AHCI Indexes

Modeling and dynamical analysis of the full-length structure of factor XII with zinc.

Kılınç E. , Can Timucin A. C. , Selim Cinaroglu S., Timucin E.

Journal of molecular modeling, vol.28, no.5, pp.129, 2022 (Journal Indexed in SCI Expanded)

Toward Compilation of Balanced Protein Stability Data Sets: Flattening the Delta Delta G Curve through Systematic Enrichment

Kebabci N., TİMUÇİN A. C. , TİMUÇİN E.

JOURNAL OF CHEMICAL INFORMATION AND MODELING, vol.62, no.5, pp.1345-1355, 2022 (Journal Indexed in SCI)

Molecular modelling of the FOXO4-TP53 interaction to design senolytic peptides for the elimination of senescent cancer cells.

Le H. H. , Cinaroglu S. S. , Manalo E. C. , Ors A., Gomes M. M. , Duan Sahbaz B., et al.

EBioMedicine, vol.73, pp.103646, 2021 (Journal Indexed in SCI Expanded) Sustainable Development

Bridging the Bridging Imidazolate in the Bimetallic Center of the Cu/Zn SOD1 and ALS

TİMUÇİN A. C. , Cinaroglu S. S. , SEZERMAN O. U. , TİMUÇİN E.

FRONTIERS IN CHEMISTRY, vol.9, 2021 (Journal Indexed in SCI)

Brave New Surfactant World Revisited by Lipases: Activation and Unfolding in SDS

Shehata M., Unlu A., TİMUÇİN E.

BIOPHYSICAL JOURNAL, vol.120, no.3, 2021 (Journal Indexed in SCI)

Completing the Partially Resolved Complex Crystal Structure of Aurora Kinase A-/-N-MYC by Molecular Modeling

Altiner P., Cinaroglu S. S. , TİMUÇİN E.

BIOPHYSICAL JOURNAL, vol.120, no.3, 2021 (Journal Indexed in SCI)

Comprehensive evaluation of the MM-GBSA method on bromodomain-inhibitor sets.

Çınaroğlu S., Timuçin E.

Briefings in bioinformatics, vol.21, pp.2112-2125, 2020 (Journal Indexed in SCI)

Lipase and Water in a Deep Eutectic Solvent: Molecular Dynamics and Experimental Studies of the Effects of Water-In-Deep Eutectic Solvents on Lipase Stability.

Shehata M., Unlu A., Sezerman U. , Timucin E.

The journal of physical chemistry. B, vol.124, pp.8801-8810, 2020 (Journal Indexed in SCI)

Understanding thermal and organic solvent stability of thermoalkalophilic lipases: insights from computational predictions and experiments.

Shehata M., Timucin E. , Venturini A., Sezerman O. U.

Journal of molecular modeling, vol.26, pp.122, 2020 (Journal Indexed in SCI Expanded)

Comparative Assessment of Seven Docking Programs on a Nonredundant Metalloprotein Subset of the PDBbind Refined.

Çınaroğlu S., Timuçin E.

Journal of chemical information and modeling, vol.59, pp.3846-3859, 2019 (Journal Indexed in SCI)

Insights into an alternative benzofuran binding mode and novel scaffolds of polyketide synthase 13 inhibitors.

Çınaroğlu S., Timuçin E.

Journal of molecular modeling, vol.25, pp.130, 2019 (Journal Indexed in SCI)

In silico identification of inhibitors targeting N-Terminal domain of human Replication Protein A.

Çınaroğlu S., Timuçin E.

Journal of molecular graphics & modelling, vol.86, pp.149-159, 2019 (Journal Indexed in SCI)

Thermostability of the PYL-PP2C Heterodimer Is Dependent on Magnesium: In Silico Insights into the Link between Heat Stress Response and Magnesium Deficiency in Plants.

Timucin E. , Sezerman O. U.

Journal of chemical information and modeling, vol.58, pp.661-672, 2018 (Journal Indexed in SCI)

Predicting the impact of mutations on the specific activity of Bacillus thermocatenulatus lipase using a combined approach of docking and molecular dynamics

Yukselen O., Timucin E. , Sezerman U.

JOURNAL OF MOLECULAR RECOGNITION, vol.29, no.10, pp.466-475, 2016 (Journal Indexed in SCI)

RACK1 Is an Interaction Partner of ATG5 and a Novel Regulator of Autophagy

Erbil S., ORAL Ö., Mitou G., Kig C., Durmaz-Timucin E. , Guven-Maiorov E., et al.

JOURNAL OF BIOLOGICAL CHEMISTRY, vol.291, no.32, pp.16753-16765, 2016 (Journal Indexed in SCI)

Probing the roles of two tryptophans surrounding the unique zinc coordination site in lipase family I.5

Timucin E. , Cousido-Siah A., Mitschler A., Podjarny A., Sezerman O. U.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, vol.84, no.1, pp.129-142, 2016 (Journal Indexed in SCI)

Zinc Modulates Self-Assembly of Bacillus thermocatenulatus Lipase

Timucin E. , Sezerman O. U.

BIOCHEMISTRY, vol.54, no.25, pp.3901-3910, 2015 (Journal Indexed in SCI)

Direct in vitro selection of titanium-binding epidermal growth factor

Tada S., Timucin E. , Kitajima T., Sezerman O. U. , Ito Y.

BIOMATERIALS, vol.35, no.11, pp.3497-3503, 2014 (Journal Indexed in SCI)

The Conserved Lid Tryptophan, W211, Potentiates Thermostability and Thermoactivity in Bacterial Thermoalkalophilic Lipases

Timucin E. , Sezerman O. U.

PLOS ONE, vol.8, no.12, 2013 (Journal Indexed in SCI)

Modifying the catalytic preference of tributyrin in Bacillus thermocatenulatus lipase through in-silico modeling of enzyme-substrate complex

Durmaz E. , Kuyucak S., Sezerman U.

PROTEIN ENGINEERING DESIGN & SELECTION, vol.26, no.5, pp.325-333, 2013 (Journal Indexed in SCI)

The drought response displayed by a DRE-binding protein from Triticum dicoccoides.

Lucas S., Durmaz E. , Akpınar B., Budak H.

Plant physiology and biochemistry : PPB, vol.49, pp.346-51, 2011 (Journal Indexed in SCI) Sustainable Development

Refereed Congress / Symposium Publications in Proceedings

Rationally designed FOXO4-p53 interfering peptide selectively kills chemo-therapy-induced senescent and dormant cancer cells in vivo

Timuçin E. , Fischer J. M. , Sezerman U. , Çınaroğlu S. S.

Ending Age-Related Diseases: Investment Prospects and Advances in Research conference, New-York, United States Of America, 11 - 12 July 2019, pp.39 Sustainable Development

Biochemical and structural characterization of the propeptide of pregnancy-associated plasma protein A and its cellular effects

Durer Z. A. , Bozkurt S., Öz Arslan D. , Timuçin E. , Vizcarra C. L. , Coskun A.

Joint 12th EBSA European Biophysics Congress / 10th IUPAP International Conference on Biological Physics (ICBP), Madrid, Spain, 20 - 24 July 2019, vol.48, pp.149

Comparative Assessment of Molecular Docking for the Ligands Closely Interacting with Metals in Metalloproteins

Timuçin E. , Çınaroğlu S. S.

Organalle Biogenesis and Function in Cell Physiology and in Disease Conference, İstanbul, Turkey, 27 - 29 May 2019

Magnesium confers stability to the PYL10 PP2C complex at high temperatures Insights from molecular dynamics simulations

SEZERMAN O. U. , TİMUÇİN E. , ÇETİN E.

2nd International Symposium on Magnesium in Crop Production, Food Quality and Human Health, Sao-Paulo, Brazil, 4 - 06 November 2014

Zinc induces self assembly of thermoalkalophilic lipases A strategy for thermostability

TİMUÇİN E. , SEZERMAN O. U.

The 28th Annual Symposium of Protein Society, San Diego, CA, United States Of America, 27 - 30 July 2014

Zinc Induces Self-Assembly Of Bacterial Thermoalkalophilic Lipases: A Strategy For Thermostability

Timucin E. , Sezerman O. U.

28th Annual Symposium of the Protein-Society, California, United States Of America, 27 - 30 July 2014, vol.23, pp.134

Modifying the chain length selectivity of Bacillus thermocatenulatus lipase through computational models of the enzyme substrate complex

TİMUÇİN E. , KUYUCAK S., SEZERMAN O. U.

İstanbul İstatistiksel Fizik Günleri, 28 - 30 June 2012

Expression and Cellular Localization of ZIP1 Transporter Under Zinc Deficiency in Wild Emmer Wheat International Durum Wheat Symposium

TİMUÇİN E. , ÇORUH C., DİNLER DOĞANAY G., GRUSAK M., PELEG Z., SARANGA Y., et al.

From Seed to Pasta: The Durum Wheat Chain, Bologna, Italy, 30 June - 03 July 2008

Assoc. Prof. Emel TİMUÇİN

Publications & Works

Articles Published in Journals That Entered SCI, SSCI and AHCI Indexes

Modeling and dynamical analysis of the full-length structure of factor XII with zinc.

Toward Compilation of Balanced Protein Stability Data Sets: Flattening the Delta Delta G Curve through Systematic Enrichment

Molecular modelling of the FOXO4-TP53 interaction to design senolytic peptides for the elimination of senescent cancer cells.

Bridging the Bridging Imidazolate in the Bimetallic Center of the Cu/Zn SOD1 and ALS

Brave New Surfactant World Revisited by Lipases: Activation and Unfolding in SDS

Completing the Partially Resolved Complex Crystal Structure of Aurora Kinase A-/-N-MYC by Molecular Modeling

Comprehensive evaluation of the MM-GBSA method on bromodomain-inhibitor sets.

Lipase and Water in a Deep Eutectic Solvent: Molecular Dynamics and Experimental Studies of the Effects of Water-In-Deep Eutectic Solvents on Lipase Stability.

Understanding thermal and organic solvent stability of thermoalkalophilic lipases: insights from computational predictions and experiments.

Comparative Assessment of Seven Docking Programs on a Nonredundant Metalloprotein Subset of the PDBbind Refined.

Insights into an alternative benzofuran binding mode and novel scaffolds of polyketide synthase 13 inhibitors.

In silico identification of inhibitors targeting N-Terminal domain of human Replication Protein A.

Thermostability of the PYL-PP2C Heterodimer Is Dependent on Magnesium: In Silico Insights into the Link between Heat Stress Response and Magnesium Deficiency in Plants.

Predicting the impact of mutations on the specific activity of Bacillus thermocatenulatus lipase using a combined approach of docking and molecular dynamics

RACK1 Is an Interaction Partner of ATG5 and a Novel Regulator of Autophagy

Probing the roles of two tryptophans surrounding the unique zinc coordination site in lipase family I.5

Zinc Modulates Self-Assembly of Bacillus thermocatenulatus Lipase

Direct in vitro selection of titanium-binding epidermal growth factor

The Conserved Lid Tryptophan, W211, Potentiates Thermostability and Thermoactivity in Bacterial Thermoalkalophilic Lipases

Modifying the catalytic preference of tributyrin in Bacillus thermocatenulatus lipase through in-silico modeling of enzyme-substrate complex

The drought response displayed by a DRE-binding protein from Triticum dicoccoides.

Refereed Congress / Symposium Publications in Proceedings

Rationally designed FOXO4-p53 interfering peptide selectively kills chemo-therapy-induced senescent and dormant cancer cells in vivo

Biochemical and structural characterization of the propeptide of pregnancy-associated plasma protein A and its cellular effects

Comparative Assessment of Molecular Docking for the Ligands Closely Interacting with Metals in Metalloproteins

Magnesium confers stability to the PYL10 PP2C complex at high temperatures Insights from molecular dynamics simulations

Zinc induces self assembly of thermoalkalophilic lipases A strategy for thermostability

Zinc Induces Self-Assembly Of Bacterial Thermoalkalophilic Lipases: A Strategy For Thermostability

Modifying the chain length selectivity of Bacillus thermocatenulatus lipase through computational models of the enzyme substrate complex

Computational Models for Chain Length Selectivity of Bacillus thermocatenulatus lipase

Modification of Media pH Significantly Improves Recombinant Protein Stabilityin Pichia pastoris

Treatment of water polluted with antibiotic resistant bacteria via chlorine and ozone disinfection

High throughput protein expression in Pichia pastoris using a non repressing carbon source

Isolation and cloning of dehydration responsive element binding protein DREB from Triticum dicoccoides

Expression and Cellular Localization of ZIP1 Transporter Under Zinc Deficiency in Wild Emmer Wheat International Durum Wheat Symposium